Extensive Characterization of the Human Salivary Basic Proline-Rich Protein Family by Top-Down Mass Spectrometry

J Proteome Res. 2018 Sep 7;17(9):3292-3307. doi: 10.1021/acs.jproteome.8b00444. Epub 2018 Aug 20.

Abstract

Human basic proline-rich proteins and basic glycosylated proline-rich proteins, encoded by the polymorphic PRB1-4 genes and expressed only in parotid glands, are the most complex family of adult salivary proteins. The family includes 11 parent peptides/proteins and more than 6 parent glycosylated proteins, but a high number of proteoforms with rather similar structures derive from polymorphisms and post-translational modifications. 55 new components of the family were characterized by top-down liquid chromatography-mass spectrometry and tandem-mass platforms, bringing the total number of proteoforms to 109. The new components comprise the three variants P-H S1 → A, P-Ko P36 → S, and P-Ko A41 → S and several of their naturally occurring proteolytic fragments. The paper represents an updated reference for the peptides included in the heterogeneous family of proteins encoded by PRB1/PRB4. MS data are available via ProteomeXchange with the identifier PXD009813.

Keywords: basic proline-rich proteins; human saliva; mass spectrometry; top-down proteomics.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adult
  • Amino Acid Sequence
  • Chromatography, Liquid
  • Female
  • Glycosylation
  • Healthy Volunteers
  • Humans
  • Male
  • Middle Aged
  • Parotid Gland / chemistry
  • Parotid Gland / metabolism
  • Peptides / analysis
  • Protein Isoforms / chemistry
  • Protein Isoforms / genetics
  • Protein Isoforms / isolation & purification
  • Protein Isoforms / metabolism
  • Protein Processing, Post-Translational*
  • Proteolysis
  • Proteomics / methods
  • Saliva / chemistry*
  • Salivary Proline-Rich Proteins / chemistry
  • Salivary Proline-Rich Proteins / genetics
  • Salivary Proline-Rich Proteins / isolation & purification
  • Salivary Proline-Rich Proteins / metabolism*
  • Tandem Mass Spectrometry

Substances

  • PRB1 protein, human
  • PRB2 protein, human
  • PRB3 protein, human
  • PRB4 protein, human
  • Peptides
  • Protein Isoforms
  • Salivary Proline-Rich Proteins