Differential distribution and enrichment of non-coding RNAs in exosomes from normal and Cancer-associated fibroblasts in colorectal cancer

Mol Cancer. 2018 Aug 3;17(1):114. doi: 10.1186/s12943-018-0863-4.

Abstract

Exosome production from cancer-associated fibroblasts seems to be an important driver of tumor progression. We report the first in-depth biotype characterization of ncRNAs, analyzed by Next Generation Sequencing and Bioinformatics, expressed in established primary human normal and cancer-associated fibroblasts (CAFs) from cancer and normal mucosa tissues from 9 colorectal cancer patients, and/or packaged in their derived exosomes. Differential representation and enrichment analyses based on these ncRNAs revealed a significant number of differences between the ncRNA content of exosomes and the expression patterns of the normal and cancer-associated fibroblast cells. ncRNA regulatory elements are specifically packaged in CAF-derived exosomes, supporting a specific cross-talk between CAFs and colon cancer cells and/or other stromal cells, mediated by exosomes. These sncRNAs are potential biomarkers present in cancer-associated fibroblast-derived exosomes, which should thereby contribute to developing new non-invasive diagnostic, prognostic and predictive methods for clinical applications in management of cancer patients.

Keywords: Colon Cancer; Exosomes; Liquid biopsy; Next generation sequencing; Non-coding RNAs; Tumor microenvironment.

Publication types

  • Letter
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Biomarkers, Tumor / genetics
  • Cancer-Associated Fibroblasts / chemistry
  • Cancer-Associated Fibroblasts / cytology*
  • Cell Movement
  • Cell Proliferation
  • Cells, Cultured
  • Colorectal Neoplasms / genetics*
  • Exosomes / genetics*
  • Fibroblasts / chemistry
  • Fibroblasts / cytology
  • Gene Expression Regulation, Neoplastic
  • High-Throughput Nucleotide Sequencing / methods*
  • Humans
  • Prognosis
  • RNA, Untranslated / genetics*
  • Sequence Analysis, RNA
  • Tumor Microenvironment

Substances

  • Biomarkers, Tumor
  • RNA, Untranslated