NetoVIR: Modular Approach to Customize Sample Preparation Procedures for Viral Metagenomics

Methods Mol Biol. 2018:1838:85-95. doi: 10.1007/978-1-4939-8682-8_7.

Abstract

The democratization of next-generation sequencing (NGS) technologies has enabled scientists to explore the diversity of microbial life in various ecological niches in an unpreceded depth. The role of viruses as a key player in health and disease is becoming increasingly clear. To address the need for an up scalable, reproducible protocol to purify RNA and DNA viruses from a sample, we describe our optimized method. The Novel Enrichment Technique Of Viromes (NetoVIR) allows researchers to attain a fast, reproducible, and high-throughput sample preparation protocol for NGS gut viromics studies. With appropriate prior homogenization steps, this protocol can be extended to any biological samples.

Keywords: Next-generation sequencing; Sample preparation; Virome; Viromics.

MeSH terms

  • Gene Library
  • Genome, Viral
  • High-Throughput Nucleotide Sequencing
  • Metagenome*
  • Metagenomics* / methods
  • Real-Time Polymerase Chain Reaction
  • Viruses / genetics*