IRES-dependent ribosome repositioning directs translation of a +1 overlapping ORF that enhances viral infection

Nucleic Acids Res. 2018 Dec 14;46(22):11952-11967. doi: 10.1093/nar/gky1121.

Abstract

RNA structures can interact with the ribosome to alter translational reading frame maintenance and promote recoding that result in alternative protein products. Here, we show that the internal ribosome entry site (IRES) from the dicistrovirus Cricket paralysis virus drives translation of the 0-frame viral polyprotein and an overlapping +1 open reading frame, called ORFx, via a novel mechanism whereby a subset of ribosomes recruited to the IRES bypasses 37 nucleotides downstream to resume translation at the +1-frame 13th non-AUG codon. A mutant of CrPV containing a stop codon in the +1 frame ORFx sequence, yet synonymous in the 0-frame, is attenuated compared to wild-type virus in a Drosophila infection model, indicating the importance of +1 ORFx expression in promoting viral pathogenesis. This work demonstrates a novel programmed IRES-mediated recoding strategy to increase viral coding capacity and impact virus infection, highlighting the diversity of RNA-driven translation initiation mechanisms in eukaryotes.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Base Pairing
  • Base Sequence
  • Cell Line
  • Dicistroviridae / genetics*
  • Dicistroviridae / metabolism
  • Drosophila melanogaster / cytology
  • Drosophila melanogaster / metabolism
  • Drosophila melanogaster / virology
  • Gene Expression Regulation, Viral*
  • Host-Pathogen Interactions / genetics*
  • Internal Ribosome Entry Sites*
  • Nucleic Acid Conformation
  • Open Reading Frames
  • Polyproteins / genetics
  • Polyproteins / metabolism
  • Protein Biosynthesis*
  • Ribosomes / genetics
  • Ribosomes / metabolism
  • Signal Transduction
  • Viral Proteins / genetics*
  • Viral Proteins / metabolism

Substances

  • Internal Ribosome Entry Sites
  • Polyproteins
  • Viral Proteins

Supplementary concepts

  • Cricket paralysis virus
  • Taura syndrome virus