Probing Membrane Protein Insertion into Lipid Bilayers by Solid-State NMR

Abstract

Determination of the environment surrounding a protein is often key to understanding its function and can also be used to infer the structural properties of the protein. By using proton-detected solid-state NMR, we show that reduced spin diffusion within the protein under conditions of fast magic-angle spinning, high magnetic field, and sample deuteration allows the efficient measurement of site-specific exposure to mobile water and lipids. We demonstrate this site specificity on two membrane proteins, the human voltage dependent anion channel, and the alkane transporter AlkL from Pseudomonas putida. Transfer from lipids is observed selectively in the membrane spanning region, and an average lipid-protein transfer rate of 6 s^-1 was determined for residues protected from exchange. Transfer within the protein, as tracked in the ¹⁵ N-¹ H 2D plane, was estimated from initial rates and found to be in a similar range of about 8 to 15 s^-1 for several resolved residues, explaining the site specificity.

Keywords: lipid bilayer; magic-angle spinning; membrane protein; solid-state NMR; surface environment.