Transmembrane but not soluble helices fold inside the ribosome tunnel

Nat Commun. 2018 Dec 7;9(1):5246. doi: 10.1038/s41467-018-07554-7.

Abstract

Integral membrane proteins are assembled into the ER membrane via a continuous ribosome-translocon channel. The hydrophobicity and thickness of the core of the membrane bilayer leads to the expectation that transmembrane (TM) segments minimize the cost of harbouring polar polypeptide backbones by adopting a regular pattern of hydrogen bonds to form α-helices before integration. Co-translational folding of nascent chains into an α-helical conformation in the ribosomal tunnel has been demonstrated previously, but the features governing this folding are not well understood. In particular, little is known about what features influence the propensity to acquire α-helical structure in the ribosome. Using in vitro translation of truncated nascent chains trapped within the ribosome tunnel and molecular dynamics simulations, we show that folding in the ribosome is attained for TM helices but not for soluble helices, presumably facilitating SRP (signal recognition particle) recognition and/or a favourable conformation for membrane integration upon translocon entry.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Endoplasmic Reticulum / metabolism
  • Hydrophobic and Hydrophilic Interactions
  • Membrane Proteins / chemistry*
  • Membrane Proteins / genetics
  • Membrane Proteins / metabolism
  • Molecular Dynamics Simulation
  • Protein Folding*
  • Protein Structure, Secondary*
  • Ribosomes / chemistry*
  • Ribosomes / metabolism
  • Sequence Homology, Amino Acid
  • Signal Recognition Particle / chemistry
  • Signal Recognition Particle / genetics
  • Signal Recognition Particle / metabolism

Substances

  • Membrane Proteins
  • Signal Recognition Particle