DNA Methylation and Transcription Factors Competitively Regulate SIRT4 Promoter Activity in Bovine Adipocytes: Roles of NRF1 and CMYB

DNA Cell Biol. 2019 Jan;38(1):63-75. doi: 10.1089/dna.2018.4454. Epub 2018 Dec 20.

Abstract

Sirtuin 4 (SIRT4) belongs to the mitochondrial sirtuin protein family, a class of NAD+-dependent protein deacylases that remove post-translational acyl modifications from cellular substrates during the regulation of various biological pathways. SIRT4 has been shown to regulate lipid homeostasis. However, the mechanism by which the bovine SIRT4 gene is transcriptionally regulated remains unknown. To explore the molecular mechanism of SIRT4 expression, we obtained a 400-kb fragment of the 5'-regulatory region of bovine SIRT4 by molecular cloning, which contained a CpG island. Electrophoretic mobility shift assays and luciferase reporter gene assays identified the nuclear respiratory factor 1 (NRF1) and myb proto-oncogene protein (CMYB) binding sites as transcriptional repression and activation sites in the SIRT4 promoter region, respectively. We further verified that NRF1 and CMYB bind to the SIRT4 promoter using chromatin immunoprecipitation assays. In addition, from DNA methylation and reporter gene assays, results revealed that SIRT4 promoter activity was enhanced by demethylation. Further, NRF1-mediated transcriptional inhibition and CMYB-mediated transcriptional activation of SIRT4 expression were strengthened by demethylation during bovine adipocyte differentiation. Taken together, our results shed light on the mechanism underlying the promoter methylation and transcriptional regulation of SIRT4 expression in bovine adipocytes.

Keywords: DNA methylation; SIRT4; adipocyte; bovine; promoter; transcription factor.

MeSH terms

  • Adipocytes / metabolism*
  • Animals
  • Cattle
  • Cell Culture Techniques
  • Chromatin Immunoprecipitation / methods
  • Cloning, Organism / methods
  • DNA Methylation / genetics*
  • Electrophoretic Mobility Shift Assay / methods
  • Mitochondrial Proteins / metabolism*
  • Mutagenesis, Site-Directed / methods
  • Nuclear Respiratory Factor 1 / metabolism*
  • Promoter Regions, Genetic
  • Proto-Oncogene Proteins c-myb / metabolism*
  • Real-Time Polymerase Chain Reaction

Substances

  • Mitochondrial Proteins
  • Nuclear Respiratory Factor 1
  • Proto-Oncogene Proteins c-myb