A T-cell receptor escape channel allows broad T-cell response to CD1b and membrane phospholipids

Nat Commun. 2019 Jan 4;10(1):56. doi: 10.1038/s41467-018-07898-0.

Abstract

CD1 proteins are expressed on dendritic cells, where they display lipid antigens to T-cell receptors (TCRs). Here we describe T-cell autoreactivity towards ubiquitous human membrane phospholipids presented by CD1b. These T-cells discriminate between two major types of lipids, sphingolipids and phospholipids, but were broadly cross-reactive towards diverse phospholipids including phosphatidylcholine, phosphatidylinositol and phosphatidylethanolamine. The crystal structure of a representative TCR bound to CD1b-phosphatidylcholine provides a molecular mechanism for this promiscuous recognition. We observe a lateral escape channel in the TCR, which shunted phospholipid head groups sideways along the CD1b-TCR interface, without contacting the TCR. Instead the TCR recognition site involved the neck region phosphate that is common to all major self-phospholipids but absent in sphingolipids. Whereas prior studies have focused on foreign lipids or rare self-lipids, we define a new molecular mechanism of promiscuous recognition of common self-phospholipids including those that are known targets in human autoimmune disease.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Antigen Presentation
  • Antigens, CD1 / chemistry*
  • Binding, Competitive
  • Cell Line
  • Cell Membrane / immunology
  • Cell Membrane / metabolism
  • Crystallography, X-Ray
  • Humans
  • Models, Immunological
  • Molecular Docking Simulation
  • Phospholipids / chemistry*
  • Receptors, Antigen, T-Cell / chemistry*
  • T-Lymphocytes / physiology*

Substances

  • Antigens, CD1
  • CD1b antigen
  • Phospholipids
  • Receptors, Antigen, T-Cell