Complete Reference Genome Assembly for Commensalibacter sp. Strain AMU001, an Acetic Acid Bacterium Isolated from the Gut of Honey Bees

doi:10.1128/MRA.01459-18

. 2019 Jan 3;8(1):e01459-18.

doi: 10.1128/MRA.01459-18. eCollection 2019 Jan.

Complete Reference Genome Assembly for Commensalibacter sp. Strain AMU001, an Acetic Acid Bacterium Isolated from the Gut of Honey Bees

Stefanos Siozios¹, Josephine Moran¹, Mary Chege², Gregory D D Hurst¹, Juan C Paredes²

Affiliations

¹ Institute of Integrative Biology, Faculty of Health and Life Sciences, University of Liverpool, Liverpool, United Kingdom.
² International Centre of Insect Physiology and Ecology (ICIPE), Nairobi, Kenya.

PMID: 30637398
PMCID: PMC6318369
DOI: 10.1128/MRA.01459-18

Complete Reference Genome Assembly for Commensalibacter sp. Strain AMU001, an Acetic Acid Bacterium Isolated from the Gut of Honey Bees

Stefanos Siozios et al. Microbiol Resour Announc. 2019.

. 2019 Jan 3;8(1):e01459-18.

doi: 10.1128/MRA.01459-18. eCollection 2019 Jan.

Authors

Stefanos Siozios¹, Josephine Moran¹, Mary Chege², Gregory D D Hurst¹, Juan C Paredes²

Affiliations

¹ Institute of Integrative Biology, Faculty of Health and Life Sciences, University of Liverpool, Liverpool, United Kingdom.
² International Centre of Insect Physiology and Ecology (ICIPE), Nairobi, Kenya.

PMID: 30637398
PMCID: PMC6318369
DOI: 10.1128/MRA.01459-18

Abstract

We report here the genome sequence of a Commensalibacter sp. strain (AMU001) isolated from honey bees (Apis mellifera) from Seychelles. By combining long- and short-read sequencing technologies, we produced the first complete reference genome assembly for the Commensalibacter genus. We anticipate that this will aid future comparative and functional genomic studies.

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References

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1. Roh SW, Nam Y-D, Chang H-W, Kim K-H, Kim M-S, Ryu J-H, Kim S-H, Lee W-J, Bae J-W. 2008. Phylogenetic characterization of two novel commensal bacteria involved with innate immune homeostasis in Drosophila melanogaster. Appl Environ Microbiol 74:6171–6177. doi:10.1128/AEM.00301-08. - DOI - PMC - PubMed
1. Chandler JA, Lang JM, Bhatnagar S, Eisen JA, Kopp A. 2011. Bacterial communities of diverse Drosophila species: ecological context of a host-microbe model system. PLoS Genet 7:e1002272. doi:10.1371/journal.pgen.1002272. - DOI - PMC - PubMed
1. Ryu J-H, Kim S-H, Lee H-Y, Bai JY, Nam Y-D, Bae J-W, Lee DG, Shin SC, Ha E-M, Lee W-J. 2008. Innate immune homeostasis by the homeobox gene caudal and commensal-gut mutualism in Drosophila. Science 319:777–782. doi:10.1126/science.1149357. - DOI - PubMed
1. Martinson VG, Danforth BN, Minckley RL, Rueppell O, Tingek S, Moran NA. 2011. A simple and distinctive microbiota associated with honey bees and bumble bees. Mol Ecol 20:619–628. doi:10.1111/j.1365-294X.2010.04959.x. - DOI - PubMed

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[1] Crotti E, Rizzi A, Chouaia B, Ricci I, Favia G, Alma A, Sacchi L, Bourtzis K, Mandrioli M, Cherif A, Bandi C, Daffonchio D. 2010. Acetic acid bacteria, newly emerging symbionts of insects. Appl Environ Microbiol 76:6963–6970. doi:10.1128/AEM.01336-10. - DOI - PMC - PubMed

[2] Crotti E, Rizzi A, Chouaia B, Ricci I, Favia G, Alma A, Sacchi L, Bourtzis K, Mandrioli M, Cherif A, Bandi C, Daffonchio D. 2010. Acetic acid bacteria, newly emerging symbionts of insects. Appl Environ Microbiol 76:6963–6970. doi:10.1128/AEM.01336-10. - DOI - PMC - PubMed

[3] Roh SW, Nam Y-D, Chang H-W, Kim K-H, Kim M-S, Ryu J-H, Kim S-H, Lee W-J, Bae J-W. 2008. Phylogenetic characterization of two novel commensal bacteria involved with innate immune homeostasis in Drosophila melanogaster. Appl Environ Microbiol 74:6171–6177. doi:10.1128/AEM.00301-08. - DOI - PMC - PubMed

[4] Roh SW, Nam Y-D, Chang H-W, Kim K-H, Kim M-S, Ryu J-H, Kim S-H, Lee W-J, Bae J-W. 2008. Phylogenetic characterization of two novel commensal bacteria involved with innate immune homeostasis in Drosophila melanogaster. Appl Environ Microbiol 74:6171–6177. doi:10.1128/AEM.00301-08. - DOI - PMC - PubMed

[5] Chandler JA, Lang JM, Bhatnagar S, Eisen JA, Kopp A. 2011. Bacterial communities of diverse Drosophila species: ecological context of a host-microbe model system. PLoS Genet 7:e1002272. doi:10.1371/journal.pgen.1002272. - DOI - PMC - PubMed

[6] Chandler JA, Lang JM, Bhatnagar S, Eisen JA, Kopp A. 2011. Bacterial communities of diverse Drosophila species: ecological context of a host-microbe model system. PLoS Genet 7:e1002272. doi:10.1371/journal.pgen.1002272. - DOI - PMC - PubMed

[7] Ryu J-H, Kim S-H, Lee H-Y, Bai JY, Nam Y-D, Bae J-W, Lee DG, Shin SC, Ha E-M, Lee W-J. 2008. Innate immune homeostasis by the homeobox gene caudal and commensal-gut mutualism in Drosophila. Science 319:777–782. doi:10.1126/science.1149357. - DOI - PubMed

[8] Ryu J-H, Kim S-H, Lee H-Y, Bai JY, Nam Y-D, Bae J-W, Lee DG, Shin SC, Ha E-M, Lee W-J. 2008. Innate immune homeostasis by the homeobox gene caudal and commensal-gut mutualism in Drosophila. Science 319:777–782. doi:10.1126/science.1149357. - DOI - PubMed

[9] Martinson VG, Danforth BN, Minckley RL, Rueppell O, Tingek S, Moran NA. 2011. A simple and distinctive microbiota associated with honey bees and bumble bees. Mol Ecol 20:619–628. doi:10.1111/j.1365-294X.2010.04959.x. - DOI - PubMed

[10] Martinson VG, Danforth BN, Minckley RL, Rueppell O, Tingek S, Moran NA. 2011. A simple and distinctive microbiota associated with honey bees and bumble bees. Mol Ecol 20:619–628. doi:10.1111/j.1365-294X.2010.04959.x. - DOI - PubMed

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Complete Reference Genome Assembly for Commensalibacter sp. Strain AMU001, an Acetic Acid Bacterium Isolated from the Gut of Honey Bees

Affiliations

Complete Reference Genome Assembly for Commensalibacter sp. Strain AMU001, an Acetic Acid Bacterium Isolated from the Gut of Honey Bees

Authors

Affiliations

Abstract

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References

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