Pararhodobacter oceanensis sp. nov., isolated from marine intertidal sediment and emended description of the genus Pararhodobacter

Int J Syst Evol Microbiol. 2019 Mar;69(3):866-870. doi: 10.1099/ijsem.0.003255. Epub 2019 Jan 29.

Abstract

A Gram-stain-negative, rod-shaped, non-motile and facultatively anaerobic bacterium, designated AM505T, was isolated from Shuangdao Bay in Weihai, China. Cells of strain AM505T were 0.4-0.8 µm wide, 1.3-3.3 µm long, catalase-positive and oxidase-positive. Strain AM505T was tolerant to moderate salt conditions. Growth occurred at 4-40 °C (optimum, 28-33 °C), pH 6.5-9.5 (pH 7.5-8.0) and with 0.5-9.0 % NaCl (w/v; 2.0-4.0 %). A phylogenetic analysis of the 16S rRNA gene indicated that strain AM505T was a member of the genus Pararhodobacter within the family Rhodobacteraceae. The most closely related neighbour was Pararhodobacter aggregans DSM 18938T (97.6 %). The average nucleotide identity value between AM505T and P. aggregans DSM 18938T was 75.3 %. The major respiratory quinone of strain AM505T was ubiquinone-10 and the predominant cellular fatty acids (>10 %) were summed feature 8 (consisting of C18 : 1ω7c and/or C18 : 1ω6c), 11-methyl C18 : 1ω7c and C18 : 0. The major polar lipids were diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, phosphatidylcholine and an unidentified aminolipid. The genomic DNA G+C content was 63.0 mol%. Based on our polyphasic taxonomic study, strain AM505T should be a novel species in the genus Pararhodobacter, for which the name Pararhodobacteroceanensis sp. nov. is proposed. The type strain is AM505T (=KCTC 62407T=MCCC 1H00289T).

Keywords: Pararhodobacter; Rhodobacteraceae; polyphasic taxonomy.

MeSH terms

  • Bacterial Typing Techniques
  • Base Composition
  • Bays
  • China
  • DNA, Bacterial / genetics
  • Fatty Acids / chemistry
  • Geologic Sediments / microbiology*
  • Phospholipids / chemistry
  • Phylogeny*
  • RNA, Ribosomal, 16S / genetics
  • Rhodobacteraceae / classification*
  • Rhodobacteraceae / isolation & purification
  • Seawater / microbiology*
  • Sequence Analysis, DNA
  • Ubiquinone / chemistry

Substances

  • DNA, Bacterial
  • Fatty Acids
  • Phospholipids
  • RNA, Ribosomal, 16S
  • Ubiquinone
  • Ubiquinone Q2