On-demand serum-free media formulations for human hematopoietic cell expansion using a high dimensional search algorithm

Commun Biol. 2019 Feb 1:2:48. doi: 10.1038/s42003-019-0296-7. eCollection 2019.

Abstract

Substitution of serum and other clinically incompatible reagents is requisite for controlling product quality in a therapeutic cell manufacturing process. However, substitution with chemically defined compounds creates a complex, large-scale optimization problem due to the large number of possible factors and dose levels, making conventional process optimization methods ineffective. We present a framework for high-dimensional optimization of serum-free formulations for the expansion of human hematopoietic cells. Our model-free approach utilizes evolutionary computing principles to drive an experiment-based feedback control platform. We validate this method by optimizing serum-free formulations for first, TF-1 cells and second, primary T-cells. For each cell type, we successfully identify a set of serum-free formulations that support cell expansions similar to the serum-containing conditions commonly used to culture these cells, by experimentally testing less than 1 × 10-5 % of the total search space. We also demonstrate how this iterative search process can provide insights into factor interactions that contribute to supporting cell expansion.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Algorithms*
  • Cell Culture Techniques / standards*
  • Cell Cycle / drug effects
  • Cell Line, Transformed
  • Cell Proliferation / drug effects
  • Culture Media, Serum-Free / chemistry
  • Culture Media, Serum-Free / pharmacology*
  • Factor Analysis, Statistical
  • Hematopoietic Stem Cells / cytology
  • Hematopoietic Stem Cells / drug effects*
  • Hematopoietic Stem Cells / physiology
  • Humans
  • Primary Cell Culture
  • T-Lymphocytes / cytology
  • T-Lymphocytes / drug effects*
  • T-Lymphocytes / physiology

Substances

  • Culture Media, Serum-Free