UVB drives different stages of epigenome alterations during progression of skin cancer

Cancer Lett. 2019 May 1;449:20-30. doi: 10.1016/j.canlet.2019.02.010. Epub 2019 Feb 13.

Abstract

Exposure to ultraviolet B (UVB) irradiation results in multitude of cellular responses including generation of reactive oxygen species and DNA damage and is responsible for non-melanoma skin cancers (NMSCs). Although genetic mutation is well documented, the epi-mutation, the alteration in epigenetics, remains elusive. In this study, we utilized CpG Methyl-seq to identify a genome-wide DNA CpG methylation, to profile the DNA methylation in UVB-irradiated SKH-1 mouse skin epidermis and non-melanoma skin papillomas at various stages. Methyl-seq and RNA-seq were performed to examine the methylation and corresponding transcriptome alterations. The methylation profiles in mouse epidermis were altered by UVB-irradiation as time progresses. Ingenuity Pathways Analysis (IPA) identified many cancer related pathways including PTEN, p53, Nrf2 and inflammatory signaling in UVB-irradiation induced carcinogenesis. Additionally, some novel genes involved in skin carcinogenesis that were not previously reported were differentially methylated, including Enf2, Mgst2, Vegfa, and Cdk4. Taken together, the current study provides novel profiles and insights of methylation and transcriptomic changes at different stages of carcinogenesis in UVB-irradiation induced NMSC and offers potential targets for prevention and treatment of NMSC at different stages of human skin cancer.

Keywords: DNA methylation; Epigenetics; Methyl-seq; Non-melanoma skin cancer; RNA-Seq; Ultraviolet-B (UVB).

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • Animals
  • CpG Islands
  • DNA Methylation*
  • Disease Progression
  • Epigenesis, Genetic
  • Female
  • Gene Expression Profiling
  • Gene Expression Regulation, Neoplastic
  • Gene Regulatory Networks / radiation effects*
  • Mice
  • Neoplasm Staging
  • Sequence Analysis, DNA / methods*
  • Skin Neoplasms / etiology
  • Skin Neoplasms / genetics
  • Skin Neoplasms / pathology*
  • Ultraviolet Rays / adverse effects*