DeepCEST: 9.4 T Chemical exchange saturation transfer MRI contrast predicted from 3 T data - a proof of concept study

Magn Reson Med. 2019 Jun;81(6):3901-3914. doi: 10.1002/mrm.27690. Epub 2019 Feb 25.

Abstract

Purpose: To determine the feasibility of employing the prior knowledge of well-separated chemical exchange saturation transfer (CEST) signals in the 9.4 T Z-spectrum to separate overlapping CEST signals acquired at 3 T, using a deep learning approach trained with 3 T and 9.4 T CEST spectral data from brains of the same subjects.

Methods: Highly spectrally resolved Z-spectra from the same volunteer were acquired by 3D-snapshot CEST MRI at 3 T and 9.4 T at low saturation power of B1 = 0.6 µT. The volume-registered 3 T Z-spectra-stack was then used as input data for a three layer deep neural network with the volume-registered 9.4 T fitted parameter stack as target data.

Results: An optimized neural net architecture could be found and verified in healthy volunteers. The gray-/white-matter contrast of the different CEST effects was predicted with only small deviations (Pearson R = 0.89). The 9.4 T prediction was less noisy compared to the directly measured CEST maps, although at the cost of slightly lower tissue contrast. Application to an unseen tumor patient measured at 3 T and 9.4 T revealed that tumorous tissue Z-spectra and corresponding hyper-/hypointensities of different CEST effects can also be predicted (Pearson R = 0.84).

Conclusion: The 9.4 T CEST signals acquired at low saturation power can be accurately estimated from CEST imaging at 3 T using a neural network trained with coregistered 3 T and 9.4 T data of healthy subjects. The deepCEST approach generalizes to Z-spectra of tumor areas and might indicate whether additional ultrahigh-field (UHF) scans will be beneficial.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Brain / diagnostic imaging
  • Brain Neoplasms / diagnostic imaging
  • Contrast Media
  • Humans
  • Image Interpretation, Computer-Assisted / methods*
  • Imaging, Three-Dimensional / methods
  • Magnetic Resonance Imaging / methods*
  • Neural Networks, Computer*
  • Proof of Concept Study

Substances

  • Contrast Media