Proteomic analysis reveals that wildtype and alanine-expanded nuclear poly(A)-binding protein exhibit differential interactions in skeletal muscle

J Biol Chem. 2019 May 3;294(18):7360-7376. doi: 10.1074/jbc.RA118.007287. Epub 2019 Mar 5.

Abstract

Oculopharyngeal muscular dystrophy (OPMD) is a late-onset, primarily autosomal dominant disease caused by a short GCN expansion in the PABPN1 (polyadenylate-binding protein nuclear 1) gene that results in an alanine expansion at the N terminus of the PABPN1 protein. Expression of alanine-expanded PABPN1 is linked to the formation of nuclear aggregates in tissues from individuals with OPMD. However, as with other nuclear aggregate-associated diseases, controversy exists over whether these aggregates are the direct cause of pathology. An emerging hypothesis is that a loss of PABPN1 function and/or aberrant protein interactions contribute to pathology in OPMD. Here, we present the first global proteomic analysis of the protein interactions of WT and alanine-expanded PABPN1 in skeletal muscle tissue. These data provide both insight into the function of PABPN1 in muscle and evidence that the alanine expansion alters the protein-protein interactions of PABPN1. We extended this analysis to demonstrate altered complex formation with and loss of function of TDP-43 (TAR DNA-binding protein 43), which we show interacts with alanine-expanded but not WT PABPN1. The results from our study support a model where altered protein interactions with alanine-expanded PABPN1 that lead to loss or gain of function could contribute to pathology in OPMD.

Keywords: PABPN1; RNA-binding protein; TAR DNA-binding protein 43 (TDP-43) (TARDBP); gene regulation; muscular dystrophy; oculopharyngeal muscular dystrophy (OPMD); poly(A) polyalanine tract; protein aggregation; protein–protein interaction; proteomics; skeletal muscle.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Alanine / metabolism*
  • Animals
  • Cells, Cultured
  • DNA-Binding Proteins / genetics
  • DNA-Binding Proteins / metabolism
  • Electroporation
  • Female
  • Male
  • Mice
  • Molecular Weight
  • Muscle, Skeletal / metabolism*
  • Muscular Dystrophy, Oculopharyngeal / genetics
  • Muscular Dystrophy, Oculopharyngeal / metabolism*
  • Nuclear Proteins / metabolism*
  • Poly(A)-Binding Protein I / genetics
  • Poly(A)-Binding Protein I / metabolism*
  • Proof of Concept Study
  • Protein Binding
  • Proteomics*

Substances

  • DNA-Binding Proteins
  • Nuclear Proteins
  • PABPN1 protein, mouse
  • Poly(A)-Binding Protein I
  • TDP-43 protein, mouse
  • Alanine