Structure of mammalian plasma fetuin-B and its mechanism of selective metallopeptidase inhibition

IUCrJ. 2019 Feb 28;6(Pt 2):317-330. doi: 10.1107/S2052252519001568. eCollection 2019 Mar 1.

Abstract

Mammalian fetuin-A and fetuin-B are abundant serum proteins with pleiotropic functions. Fetuin-B is a highly selective and potent inhibitor of metallo-peptidases (MPs) of the astacin family, which includes ovastacin in mammals. By inhibiting ovastacin, fetuin-B is essential for female fertility. The crystal structure of fetuin-B was determined unbound and in complex with archetypal astacin, and it was found that the inhibitor has tandem cystatin-type modules (CY1 and CY2). They are connected by an exposed linker with a rigid, disulfide-linked 'CPDCP-trunk', and are followed by a C-terminal region (CTR) with little regular secondary structure. The CPDCP-trunk and a hairpin of CY2 form a bipartite wedge, which slots into the active-site cleft of the MP. These elements occupy the nonprimed and primed sides of the cleft, respectively, but spare the specificity pocket so that the inhibitor is not cleaved. The aspartate in the trunk blocks the catalytic zinc of astacin, while the CY2 hairpin binds through a QWVXGP motif. The CY1 module assists in structural integrity and the CTR is not involved in inhibition, as verified by in vitro studies using a cohort of mutants and variants. Overall, the inhibition conforms to a novel 'raised-elephant-trunk' mechanism for MPs, which is reminiscent of single-domain cystatins that target cysteine peptidases. Over 200 sequences from vertebrates have been annotated as fetuin-B, underpinning its ubiquity and physiological relevance; accordingly, sequences with conserved CPDCP- and QWVXGP-derived motifs have been found from mammals to cartilaginous fishes. Thus, the raised-elephant-trunk mechanism is likely to be generally valid for the inhibition of astacins by orthologs of fetuin-B.

Keywords: X-ray crystallography; enzyme mechanisms; mammalian fertilization; metallopeptidase; multi-protein complexes; polyspermy; protein inhibitor; protein structure; sperm–egg fusion; structure determination.

Grant support

This work was funded by Deutsche Forschungsgemeinschaft grants FA1518/1-1, JA562/16 , and FL1033/1. Medizinische Fakultät, RWTH Aachen University grant . Johannes Gutenberg-Universität Mainz grant . Ministerio de Ciencia e Innovación grants BFU2015-64487R and MDM-2014-0435. Departament d’Innovació, Universitats i Empresa, Generalitat de Catalunya grant 2017SGR3. European Molecular Biology Organization grant . Centrum för Innovativ Medicin grant . Vetenskapsrådet grant .