Synthesis and structure-activity relationships of pyrazine-2-carboxamide derivatives as novel echinoderm microtubule-associated protein-like 4 (EML4)-anaplastic lymphoma kinase (ALK) inhibitors

Bioorg Med Chem. 2019 Apr 15;27(8):1683-1692. doi: 10.1016/j.bmc.2019.03.018. Epub 2019 Mar 7.

Abstract

Echinoderm microtubule-associated protein-like 4 (EML4)-anaplastic lymphoma kinase (ALK) is a valid therapeutic target for the treatment of EML4-ALK-positive non-small cell lung cancer (NSCLC). We discovered 12c as a novel and potent EML4-ALK inhibitor through structural optimization of 5a. In mice xenografted with 3T3 cells expressing EML4-ALK, oral administration of 12c demonstrated potent antitumor activity. This article describes the synthesis and biological evaluation of pyrazine-2-carboxamide derivatives along with studies of their structure-activity relationship (SAR) using computational modeling.

Keywords: Anaplastic lymphoma kinase; Docking study; Echinoderm microtubule-associated protein-like 4; Pyrazine-2-carboxamide; Structure–activity relationship.

MeSH terms

  • 3T3 Cells
  • Amides / chemistry*
  • Amides / metabolism
  • Amides / pharmacology
  • Amides / therapeutic use
  • Anaplastic Lymphoma Kinase / antagonists & inhibitors*
  • Anaplastic Lymphoma Kinase / genetics
  • Anaplastic Lymphoma Kinase / metabolism
  • Animals
  • Antineoplastic Agents / chemical synthesis*
  • Antineoplastic Agents / metabolism
  • Antineoplastic Agents / pharmacology
  • Antineoplastic Agents / therapeutic use
  • Binding Sites
  • Cell Cycle Proteins / antagonists & inhibitors*
  • Cell Cycle Proteins / genetics
  • Cell Cycle Proteins / metabolism
  • Cell Line, Tumor
  • Humans
  • Mice
  • Microtubule-Associated Proteins / antagonists & inhibitors*
  • Microtubule-Associated Proteins / genetics
  • Microtubule-Associated Proteins / metabolism
  • Molecular Docking Simulation
  • Neoplasms / drug therapy
  • Protein Structure, Tertiary
  • Pyrazines / chemistry*
  • Recombinant Fusion Proteins / biosynthesis
  • Recombinant Fusion Proteins / chemistry
  • Recombinant Fusion Proteins / genetics
  • Serine Endopeptidases / genetics
  • Serine Endopeptidases / metabolism
  • Solubility
  • Structure-Activity Relationship
  • Transplantation, Heterologous

Substances

  • Amides
  • Antineoplastic Agents
  • Cell Cycle Proteins
  • Microtubule-Associated Proteins
  • Pyrazines
  • Recombinant Fusion Proteins
  • Anaplastic Lymphoma Kinase
  • EML4 protein, human
  • Serine Endopeptidases