Functional interplay between TFIIH and KAT2A regulates higher-order chromatin structure and class II gene expression

Nat Commun. 2019 Mar 20;10(1):1288. doi: 10.1038/s41467-019-09270-2.

Abstract

The TFIIH subunit XPB is involved in combined Xeroderma Pigmentosum and Cockayne syndrome (XP-B/CS). Our analyses reveal that XPB interacts functionally with KAT2A, a histone acetyltransferase (HAT) that belongs to the hSAGA and hATAC complexes. XPB interacts with KAT2A-containing complexes on chromatin and an XP-B/CS mutation specifically elicits KAT2A-mediated large-scale chromatin decondensation. In XP-B/CS cells, the abnormal recruitment of TFIIH and KAT2A to chromatin causes inappropriate acetylation of histone H3K9, leading to aberrant formation of transcription initiation complexes on the promoters of several hundred genes and their subsequent overexpression. Significantly, this cascade of events is similarly sensitive to KAT2A HAT inhibition or to the rescue with wild-type XPB. In agreement, the XP-B/CS mutation increases KAT2A HAT activity in vitro. Our results unveil a tight connection between TFIIH and KAT2A that controls higher-order chromatin structure and gene expression and provide new insights into transcriptional misregulation in a cancer-prone DNA repair-deficient disorder.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Acetylation
  • CRISPR-Associated Protein 9 / genetics
  • CRISPR-Associated Protein 9 / metabolism
  • CRISPR-Cas Systems
  • Cell Line, Tumor
  • Chromatin / chemistry*
  • Chromatin / metabolism
  • Cockayne Syndrome / genetics*
  • Cockayne Syndrome / metabolism
  • Cockayne Syndrome / pathology
  • Fibroblasts / cytology
  • Fibroblasts / metabolism
  • Gene Editing
  • Gene Expression Regulation
  • Histone Acetyltransferases / antagonists & inhibitors
  • Histone Acetyltransferases / genetics*
  • Histone Acetyltransferases / metabolism
  • Histones / genetics
  • Histones / metabolism*
  • Humans
  • Models, Biological
  • Osteoblasts / cytology
  • Osteoblasts / metabolism
  • Primary Cell Culture
  • Protein Subunits / genetics*
  • Protein Subunits / metabolism
  • RNA, Guide, CRISPR-Cas Systems
  • RNA, Small Interfering / genetics
  • RNA, Small Interfering / metabolism
  • Signal Transduction
  • Transcription Factor TFIIH / genetics*
  • Transcription Factor TFIIH / metabolism
  • Transcription Initiation, Genetic
  • Xeroderma Pigmentosum / genetics*
  • Xeroderma Pigmentosum / metabolism
  • Xeroderma Pigmentosum / pathology

Substances

  • Chromatin
  • Histones
  • Protein Subunits
  • RNA, Small Interfering
  • Transcription Factor TFIIH
  • Histone Acetyltransferases
  • KAT2A protein, human
  • CRISPR-Associated Protein 9

Supplementary concepts

  • Xeroderma Pigmentosum B-Cockayne Syndrome