Going Beyond the Sequences: TCR Binding Patterns at the Service of Cancer Detection

Cancer Res. 2019 Apr 1;79(7):1299-1301. doi: 10.1158/0008-5472.CAN-19-0225.

Abstract

Deep sequencing of T-cell receptors enables the comprehensive profiling of lymphocyte populations and the characterization of the repertoire of T-cell responses against tumors, which could be applied to diagnose cancers. Ostmeyer and colleagues introduce a novel approach to characterize TCR patterns correlating with antigen recognition. By projecting the large TCR sequence space into a handful of biophysicochemical descriptors for key residues and seeking TCRs with similar antigen-binding capabilities even in the absence of identical amino acids, this approach presents several advantages over current methods.See related article by Ostmeyer et al., p. 1671.

Publication types

  • Research Support, Non-U.S. Gov't
  • Comment

MeSH terms

  • High-Throughput Nucleotide Sequencing
  • Protein Binding / immunology
  • Receptors, Antigen, T-Cell / genetics*
  • T-Lymphocytes / immunology*

Substances

  • Receptors, Antigen, T-Cell