Draft Genome Sequences of Three Monokaryotic Isolates of the White-Rot Basidiomycete Fungus Dichomitus squalens

doi:10.1128/MRA.00264-19

. 2019 May 2;8(18):e00264-19.

doi: 10.1128/MRA.00264-19.

Draft Genome Sequences of Three Monokaryotic Isolates of the White-Rot Basidiomycete Fungus Dichomitus squalens

Sara Casado López¹, Mao Peng¹, Paul Daly^{2

1}, Bill Andreopoulos³, Jasmyn Pangilinan³, Anna Lipzen³, Robert Riley³, Steven Ahrendt³, Vivian Ng³, Kerrie Barry³, Chris Daum³, Igor V Grigoriev³, Kristiina S Hildén⁴, Miia R Mäkelä⁵, Ronald P de Vries^{6

1

4}

Affiliations

¹ Fungal Molecular Physiology, Utrecht University, Utrecht, The Netherlands.
² Fungal Physiology, Westerdijk Fungal Biodiversity Centre, Utrecht, The Netherlands.
³ U.S. Department of Energy Joint Genome Institute, Walnut Creek, California, USA.
⁴ Fungal Genetics and Biotechnology, Department of Microbiology, University of Helsinki, Helsinki, Finland.
⁵ Fungal Genetics and Biotechnology, Department of Microbiology, University of Helsinki, Helsinki, Finland miia.r.makela@helsinki.fi r.devries@westerdijkinstitute.nl.
⁶ Fungal Physiology, Westerdijk Fungal Biodiversity Centre, Utrecht, The Netherlands miia.r.makela@helsinki.fi r.devries@westerdijkinstitute.nl.

PMID: 31048399
PMCID: PMC6498232
DOI: 10.1128/MRA.00264-19

Draft Genome Sequences of Three Monokaryotic Isolates of the White-Rot Basidiomycete Fungus Dichomitus squalens

Sara Casado López et al. Microbiol Resour Announc. 2019.

. 2019 May 2;8(18):e00264-19.

doi: 10.1128/MRA.00264-19.

Authors

Affiliations

¹ Fungal Molecular Physiology, Utrecht University, Utrecht, The Netherlands.
² Fungal Physiology, Westerdijk Fungal Biodiversity Centre, Utrecht, The Netherlands.
³ U.S. Department of Energy Joint Genome Institute, Walnut Creek, California, USA.
⁴ Fungal Genetics and Biotechnology, Department of Microbiology, University of Helsinki, Helsinki, Finland.
⁵ Fungal Genetics and Biotechnology, Department of Microbiology, University of Helsinki, Helsinki, Finland miia.r.makela@helsinki.fi r.devries@westerdijkinstitute.nl.
⁶ Fungal Physiology, Westerdijk Fungal Biodiversity Centre, Utrecht, The Netherlands miia.r.makela@helsinki.fi r.devries@westerdijkinstitute.nl.

PMID: 31048399
PMCID: PMC6498232
DOI: 10.1128/MRA.00264-19

Abstract

Here, we report the draft genome sequences of three isolates of the wood-decaying white-rot basidiomycete fungus Dichomitus squalens The genomes of these monokaryons were sequenced to provide more information on the intraspecies genomic diversity of this fungus and were compared to the previously sequenced genome of D. squalens LYAD-421 SS1.

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References

1. Andrews SR, Gill LS. 1943. Western red rot in immature Ponderosa pine in the Southwest. J Forest 41:565–573.
1. Blanchette RA, Otjen L, Carlson MC. 1987. Lignin distribution in cell walls of birch wood decayed by white rot basidiomycetes. Phytopathology 77:684–690. doi:10.1094/Phyto-77-684. - DOI
1. Renvall P, Renvall T, Niemelä T. 1991. Basidiomycetes at the timberline in Lapland 2. An annotated checklist of the polypores of northeastern Finland. Karstenia 31:13–28. doi:10.29203/ka.1991.282. - DOI
1. Daly P, Casado López S, Peng M, Lancefield CS, Purvine SO, Kim YM, Zink EM, Dohnalkova A, Singan VR, Lipzen A, Dilworth D, Wang M, Ng V, Robinson E, Orr G, Baker SE, Bruijnincx PCA, Hildén KS, Grigoriev IV, Mäkelä MR, de Vries RP. 2018. Dichomitus squalens partially tailors its molecular responses to the composition of solid wood. Environ Microbiol 20:4141–4156. doi:10.1111/1462-2920.14416. - DOI - PubMed
1. Floudas D, Binder M, Riley R, Barry K, Blanchette RA, Henrissat B, Martínez AT, Otillar R, Spatafora JW, Yadav JS, Aerts A, Benoit I, Boyd A, Carlson A, Copeland A, Coutinho PM, de Vries RP, Ferreira P, Findley K, Foster B, Gaskell J, Glotzer D, Górecki P, Heitman J, Hesse C, Hori C, Igarashi K, Jurgens JA, Kallen N, Kersten P, Kohler A, Kües U, Kumar TKA, Kuo A, LaButti K, Larrondo LF, Lindquist E, Ling A, Lombard V, Lucas S, Lundell T, Martin R, McLaughlin DJ, Morgenstern I, Morin E, Murat C, Nagy LG, Nolan M, Ohm RA, Patyshakuliyeva A, et al. . 2012. The Paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes. Science 336:1715–1719. doi:10.1126/science.1221748. - DOI - PubMed

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[1] Andrews SR, Gill LS. 1943. Western red rot in immature Ponderosa pine in the Southwest. J Forest 41:565–573.

[2] Andrews SR, Gill LS. 1943. Western red rot in immature Ponderosa pine in the Southwest. J Forest 41:565–573.

[3] Blanchette RA, Otjen L, Carlson MC. 1987. Lignin distribution in cell walls of birch wood decayed by white rot basidiomycetes. Phytopathology 77:684–690. doi:10.1094/Phyto-77-684. - DOI

[4] Blanchette RA, Otjen L, Carlson MC. 1987. Lignin distribution in cell walls of birch wood decayed by white rot basidiomycetes. Phytopathology 77:684–690. doi:10.1094/Phyto-77-684. - DOI

[5] Renvall P, Renvall T, Niemelä T. 1991. Basidiomycetes at the timberline in Lapland 2. An annotated checklist of the polypores of northeastern Finland. Karstenia 31:13–28. doi:10.29203/ka.1991.282. - DOI

[6] Renvall P, Renvall T, Niemelä T. 1991. Basidiomycetes at the timberline in Lapland 2. An annotated checklist of the polypores of northeastern Finland. Karstenia 31:13–28. doi:10.29203/ka.1991.282. - DOI

[7] Daly P, Casado López S, Peng M, Lancefield CS, Purvine SO, Kim YM, Zink EM, Dohnalkova A, Singan VR, Lipzen A, Dilworth D, Wang M, Ng V, Robinson E, Orr G, Baker SE, Bruijnincx PCA, Hildén KS, Grigoriev IV, Mäkelä MR, de Vries RP. 2018. Dichomitus squalens partially tailors its molecular responses to the composition of solid wood. Environ Microbiol 20:4141–4156. doi:10.1111/1462-2920.14416. - DOI - PubMed

[8] Daly P, Casado López S, Peng M, Lancefield CS, Purvine SO, Kim YM, Zink EM, Dohnalkova A, Singan VR, Lipzen A, Dilworth D, Wang M, Ng V, Robinson E, Orr G, Baker SE, Bruijnincx PCA, Hildén KS, Grigoriev IV, Mäkelä MR, de Vries RP. 2018. Dichomitus squalens partially tailors its molecular responses to the composition of solid wood. Environ Microbiol 20:4141–4156. doi:10.1111/1462-2920.14416. - DOI - PubMed

[9] Floudas D, Binder M, Riley R, Barry K, Blanchette RA, Henrissat B, Martínez AT, Otillar R, Spatafora JW, Yadav JS, Aerts A, Benoit I, Boyd A, Carlson A, Copeland A, Coutinho PM, de Vries RP, Ferreira P, Findley K, Foster B, Gaskell J, Glotzer D, Górecki P, Heitman J, Hesse C, Hori C, Igarashi K, Jurgens JA, Kallen N, Kersten P, Kohler A, Kües U, Kumar TKA, Kuo A, LaButti K, Larrondo LF, Lindquist E, Ling A, Lombard V, Lucas S, Lundell T, Martin R, McLaughlin DJ, Morgenstern I, Morin E, Murat C, Nagy LG, Nolan M, Ohm RA, Patyshakuliyeva A, et al. . 2012. The Paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes. Science 336:1715–1719. doi:10.1126/science.1221748. - DOI - PubMed

[10] Floudas D, Binder M, Riley R, Barry K, Blanchette RA, Henrissat B, Martínez AT, Otillar R, Spatafora JW, Yadav JS, Aerts A, Benoit I, Boyd A, Carlson A, Copeland A, Coutinho PM, de Vries RP, Ferreira P, Findley K, Foster B, Gaskell J, Glotzer D, Górecki P, Heitman J, Hesse C, Hori C, Igarashi K, Jurgens JA, Kallen N, Kersten P, Kohler A, Kües U, Kumar TKA, Kuo A, LaButti K, Larrondo LF, Lindquist E, Ling A, Lombard V, Lucas S, Lundell T, Martin R, McLaughlin DJ, Morgenstern I, Morin E, Murat C, Nagy LG, Nolan M, Ohm RA, Patyshakuliyeva A, et al. . 2012. The Paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes. Science 336:1715–1719. doi:10.1126/science.1221748. - DOI - PubMed

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Draft Genome Sequences of Three Monokaryotic Isolates of the White-Rot Basidiomycete Fungus Dichomitus squalens

Affiliations

Draft Genome Sequences of Three Monokaryotic Isolates of the White-Rot Basidiomycete Fungus Dichomitus squalens

Authors

Affiliations

Abstract

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