INDRA-IPM: interactive pathway modeling using natural language with automated assembly

Bioinformatics. 2019 Nov 1;35(21):4501-4503. doi: 10.1093/bioinformatics/btz289.


Summary: INDRA-IPM (Interactive Pathway Map) is a web-based pathway map modeling tool that combines natural language processing with automated model assembly and visualization. INDRA-IPM contextualizes models with expression data and exports them to standard formats.

Availability and implementation: INDRA-IPM is available at: Source code is available at The underlying web service API is available at

Supplementary information: Supplementary data are available at Bioinformatics online.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Computers*
  • Natural Language Processing
  • Software*