Paired involvement of human-specific Olduvai domains and NOTCH2NL genes in human brain evolution

Hum Genet. 2019 Jul;138(7):715-721. doi: 10.1007/s00439-019-02018-4. Epub 2019 May 13.

Abstract

Sequences encoding Olduvai (DUF1220) protein domains show the largest human-specific increase in copy number of any coding region in the genome and have been linked to human brain evolution. Most human-specific copies of Olduvai (119/165) are encoded by three NBPF genes that are adjacent to three human-specific NOTCH2NL genes that have been shown to promote cortical neurogenesis. Here, employing genomic, phylogenetic, and transcriptomic evidence, we show that these NOTCH2NL/NBPF gene pairs evolved jointly, as two-gene units, very recently in human evolution, and are likely co-regulated. Remarkably, while three NOTCH2NL paralogs were added, adjacent Olduvai sequences hyper-amplified, adding 119 human-specific copies. The data suggest that human-specific Olduvai domains and adjacent NOTCH2NL genes may function in a coordinated, complementary fashion to promote neurogenesis and human brain expansion in a dosage-related manner.

MeSH terms

  • Biological Evolution*
  • Brain / growth & development*
  • Brain / metabolism*
  • Carrier Proteins / genetics*
  • Genome, Human*
  • Genomics
  • Humans
  • Phylogeny
  • Protein Domains
  • Receptor, Notch2 / genetics*

Substances

  • Carrier Proteins
  • NBPF1 protein, human
  • NOTCH2 protein, human
  • Receptor, Notch2