Automated image-analysis method for the quantification of fiber morphometry and fiber type population in human skeletal muscle

Skelet Muscle. 2019 May 27;9(1):15. doi: 10.1186/s13395-019-0200-7.


Background: The quantitative analysis of muscle histomorphometry has been growing in importance in both research and clinical settings. Accurate and stringent assessment of myofibers' changes in size and number, and alterations in the proportion of oxidative (type I) and glycolytic (type II) fibers is essential for the appropriate study of aging and pathological muscle, as well as for diagnosis and follow-up of muscle diseases. Manual and semi-automated methods to assess muscle morphometry in sections are time-consuming, limited to a small field of analysis, and susceptible to bias, while most automated methods have been only tested in rodent muscle.

Methods: We developed a new macro script for Fiji-ImageJ to automatically assess human fiber morphometry in digital images of the entire muscle. We tested the functionality of our method in deltoid muscle biopsies from a heterogeneous population of subjects with histologically normal muscle (male, female, old, young, lean, obese) and patients with dermatomyositis, necrotizing autoimmune myopathy, and anti-synthetase syndrome myopathy.

Results: Our macro is fully automated, requires no user intervention, and demonstrated improved fiber segmentation by running a series of image pre-processing steps before the analysis. Likewise, our tool showed high accuracy, as compared with manual methods, for identifying the total number of fibers (r = 0.97, p < 0.001), fiber I and fiber II proportion (r = 0.92, p < 0.001), and minor diameter (r = 0.86, p < 0.001) while conducting analysis in ~ 5 min/sample. The performance of the macro analysis was maintained in pectoral and deltoid samples from subjects of different age, gender, body weight, and muscle status. The output of the analyses includes excel files with the quantification of fibers' morphometry and color-coded maps based on the fiber's size, which proved to be an advantageous feature for the fast and easy visual identification of location-specific atrophy and a potential tool for medical diagnosis.

Conclusion: Our macro is reliable and suitable for the study of human skeletal muscle for research and for diagnosis in clinical settings providing reproducible and consistent analysis when the time is of the utmost importance.

Keywords: Automated image analysis; Biomedical imaging; Clinical diagnosis; Fiber type populations; Human muscle cross-sections; Muscle fiber quantification.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adolescent
  • Adult
  • Aged
  • Aged, 80 and over
  • Aging / pathology
  • Autoimmune Diseases / diagnostic imaging
  • Autoimmune Diseases / pathology
  • Dermatomyositis / diagnostic imaging
  • Dermatomyositis / pathology
  • Female
  • Fluorescent Antibody Technique
  • Healthy Volunteers
  • Humans
  • Image Interpretation, Computer-Assisted / methods*
  • Male
  • Middle Aged
  • Muscle Fibers, Skeletal / classification*
  • Muscle Fibers, Skeletal / ultrastructure*
  • Muscle, Skeletal / diagnostic imaging*
  • Muscle, Skeletal / ultrastructure
  • Muscular Diseases / diagnostic imaging*
  • Muscular Diseases / pathology
  • Myositis / diagnostic imaging
  • Myositis / pathology
  • Obesity / diagnostic imaging
  • Obesity / pathology
  • Software
  • Young Adult

Supplementary concepts

  • Antisynthetase syndrome