Glaciihabitans arcticus sp. nov., a psychrotolerant bacterium isolated from Arctic soil

Int J Syst Evol Microbiol. 2019 Aug;69(8):2492-2497. doi: 10.1099/ijsem.0.003520. Epub 2019 Jun 18.

Abstract

A non-motile, Gram-stain-positive, rod-shaped bacterium, designated RP-3-7T, was isolated from soil sampled at the Arctic region in Cambridge Bay, NU, Canada. Cells were strictly aerobic, non-spore-forming, catalase-positive and oxidase-positive. Colonies on Reasoner's 2A agar plates were pale yellow-coloured. Strain RP-3-7T was psychrotolerant and grew optimally at 15-20 °C. Strain RP-3-7T assimilated d-glucose, d-mannitol, l-arabinose and l-proline; tolerated only 0.5 % NaCl (w/v). Phylogenetic analysis based on its 16S rRNA gene sequence revealed that strain RP-3-7T formed a lineage within the family Microbacteriaceae and clustered with members of the genus Glaciihabitans. The closest member was Glaciihabitans tibetensis MP203T (98.26 % sequence similarity). The major respiratory quinone was MK-10. The major polar lipids were diphosphatidylglycerol, phosphatidylglycerol and an unidentified glycolipid. The major cellular fatty acids were anteiso-C15 : 0, iso-C16 : 0, anteiso-C17 : 0 and anteiso-C15 : 1 A. The diagnostic amino acid was 2,4-diaminobutyric acid and whole-cell sugars were xylose, rhamnose and mannose. The DNA G+C content of strain RP-3-7T was 66.9 mol%. The average nucleotide identity and in silico DNA-DNA relatedness values between strain RP-3-7T and Glaciihabitans tibetensis MP203T were 73.79 and 20.1 %, respectively. Based on the polyphasic, genomic and phylogenetic data, strain RP-3-7T represents a novel species of the genus Glaciihabitans, for which the name Glaciihabitans arcticus sp. nov. is proposed. The type strain is RP-3-7T (=KEMB 9005-731T=KACC 21151T=NBRC 113769T).

Keywords: Arctic soil; DAB; Glaciihabitans arcticus sp. nov.; psychrotolerant.

MeSH terms

  • Actinobacteria / classification*
  • Actinobacteria / isolation & purification
  • Arctic Regions
  • Bacterial Typing Techniques
  • Base Composition
  • Canada
  • DNA, Bacterial / genetics
  • Fatty Acids / chemistry
  • Glycolipids / chemistry
  • Phospholipids / chemistry
  • Phylogeny*
  • RNA, Ribosomal, 16S / genetics
  • Sequence Analysis, DNA
  • Soil Microbiology*
  • Ubiquinone / analogs & derivatives
  • Ubiquinone / chemistry

Substances

  • DNA, Bacterial
  • Fatty Acids
  • Glycolipids
  • Phospholipids
  • RNA, Ribosomal, 16S
  • Ubiquinone
  • coenzyme Q10