Genomic Alterations in Undifferentiated Malignant Tumors with Rhabdoid Phenotype and Loss of BRG1 Immunoexpression Identified by Fine Needle Aspirates

Acta Cytol. 2019;63(5):438-444. doi: 10.1159/000500684. Epub 2019 Jun 21.

Abstract

Objective: Evidence shows that the switch/sucrose nonfermenting chromatin remodeling complex plays a critical role in DNA repair, cancer progression and dedifferentiation. BRG1 is one of its key catalytic subunits. While the loss of BRG1 expression by immunocytochemistry has been identified in a subset of malignancies arising in various sites with undifferentiated/rhabdoid morphology and poor prognosis, the underlying basis for its loss is unclear.

Methods: A retrospective search was conducted in our cytopathology archive for undifferentiated malignant tumors with rhabdoid phenotype and BRG1 loss. Clinical information was obtained from electronic medical records. Next-generation sequencing was performed following macro-dissection of paraffin-embedded cellblock tissue.

Results: Three cases were identified; all presented with widely metastatic disease with no previously diagnosed primary malignancy, and subsequently died within 6 months of initial presentation. Cytologically, the aspirates showed dyshesive and undifferentiated cells with rhabdoid features. Extensive immunocytochemical workup demonstrated immunoreactivity with vimentin only and could not establish a specific lineage. BRG1 expression was absent, while INI1 expression was retained. Two cases harbored deleterious mutations in BRG1/SMARCA4. Pathogenic mutations in TP53 were identified in all tumors.

Conclusions: BRG1 deficiency reflects underlying mutation in SMARCA4 gene in some but not all cases, suggesting that additional mechanisms may be causing BRG1 silencing. Pathogenic mutations in TP53 in all tumors are consistent with their highly aggressive nature. Recognizing the cytomorphology of this group of neoplasms and confirming their BRG1-deficient status by immunocytochemistry not only has prognostic implications, but may also impart potentially therapeutic value in the near future.

Keywords: BRG1; Fine needle aspiration; Immunohistochemistry; Molecular pathology; SMARCA4.

Publication types

  • Case Reports

MeSH terms

  • Aged
  • Biomarkers, Tumor / deficiency
  • Biomarkers, Tumor / genetics*
  • Biopsy, Fine-Needle
  • Cell Differentiation*
  • DNA Helicases / deficiency
  • DNA Helicases / genetics*
  • DNA Mutational Analysis
  • Fatal Outcome
  • Female
  • Genetic Predisposition to Disease
  • Humans
  • Immunohistochemistry
  • Lung Neoplasms / enzymology
  • Lung Neoplasms / genetics*
  • Lung Neoplasms / pathology
  • Lung Neoplasms / therapy
  • Male
  • Middle Aged
  • Mutation*
  • Nuclear Proteins / deficiency
  • Nuclear Proteins / genetics*
  • Phenotype
  • Predictive Value of Tests
  • Retrospective Studies
  • Rhabdoid Tumor / enzymology
  • Rhabdoid Tumor / genetics*
  • Rhabdoid Tumor / pathology
  • Rhabdoid Tumor / therapy
  • Submandibular Gland Neoplasms / enzymology
  • Submandibular Gland Neoplasms / genetics*
  • Submandibular Gland Neoplasms / pathology
  • Submandibular Gland Neoplasms / therapy
  • Transcription Factors / deficiency
  • Transcription Factors / genetics*
  • Treatment Outcome
  • Tumor Suppressor Protein p53 / genetics

Substances

  • Biomarkers, Tumor
  • Nuclear Proteins
  • TP53 protein, human
  • Transcription Factors
  • Tumor Suppressor Protein p53
  • SMARCA4 protein, human
  • DNA Helicases