A secretion-enhancing cis regulatory targeting element (SECReTE) involved in mRNA localization and protein synthesis

PLoS Genet. 2019 Jul 1;15(7):e1008248. doi: 10.1371/journal.pgen.1008248. eCollection 2019 Jul.

Abstract

The localization of mRNAs encoding secreted/membrane proteins (mSMPs) to the endoplasmic reticulum (ER) likely facilitates the co-translational translocation of secreted proteins. However, studies have shown that mSMP recruitment to the ER in eukaryotes can occur in a manner that is independent of the ribosome, translational control, and the signal recognition particle, although the mechanism remains largely unknown. Here, we identify a cis-acting RNA sequence motif that enhances mSMP localization to the ER and appears to increase mRNA stability, and both the synthesis and secretion of secretome proteins. Termed SECReTE, for secretion-enhancing cis regulatory targeting element, this motif is enriched in mRNAs encoding secretome proteins translated on the ER in eukaryotes and on the inner membrane of prokaryotes. SECReTE consists of ≥10 nucleotide triplet repeats enriched with pyrimidine (C/U) every third base (i.e. NNY, where N = any nucleotide, Y = pyrimidine) and can be present in the untranslated as well as the coding regions of the mRNA. Synonymous mutations that elevate the SECReTE count in a given mRNA (e.g. SUC2, HSP150, and CCW12) lead to an increase in protein secretion in yeast, while a reduction in count led to less secretion and physiological defects. Moreover, the addition of SECReTE to the 3'UTR of an mRNA for an exogenously expressed protein (e.g. GFP) led to its increased secretion from yeast cells. Thus, SECReTE constitutes a novel RNA motif that facilitates ER-localized mRNA translation and protein secretion.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • 3' Untranslated Regions
  • Endoplasmic Reticulum / genetics
  • Fungal Proteins / chemistry
  • Fungal Proteins / genetics*
  • Fungal Proteins / metabolism
  • Nucleotide Motifs
  • Protein Biosynthesis
  • RNA Stability
  • RNA Transport
  • RNA, Fungal / chemistry
  • RNA, Fungal / metabolism
  • RNA, Messenger / chemistry*
  • RNA, Messenger / metabolism*
  • Saccharomyces cerevisiae / genetics*
  • Saccharomyces cerevisiae / metabolism
  • Silent Mutation

Substances

  • 3' Untranslated Regions
  • Fungal Proteins
  • RNA, Fungal
  • RNA, Messenger

Grants and funding

This study was supported by grants to JEG from the Estate of Olga Klein Astrachan, Weizmann Institute of Science, and the Israel Science Foundation (#578/18; https://www.isf.org.il/#/support-channels/1/10). YP acknowledges support from the European Research Council for the tRNAProlif Consolidator grant (Consolidator 616622; https://erc.europa.eu/funding/consolidator-grants) and SECReTE grant (PoC grant; https://erc.europa.eu/funding/proof-concept) grants, and from the Israel Science Foundation (#1332/14; https://www.isf.org.il/#/support-channels/1/10). CB was supported in part by a Morá Miriam Rozen Gerber Post-doctoral Fellowship, Weizmann Institute of Science. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.