Crystal structure of peptide-bound neprilysin reveals key binding interactions

FEBS Lett. 2020 Jan;594(2):327-336. doi: 10.1002/1873-3468.13602. Epub 2019 Sep 21.

Abstract

Neprilysin (NEP) is a promiscuous zinc metalloprotease with broad substrate specificity and cleaves a remarkable diversity of substrates through endopeptidase action. Two of these - amyloid-β and natriuretic peptides - implicate the enzyme in both Alzheimer's disease and cardiovascular disease, respectively. Here, we report the creation of a catalytically inactive NEP (E584D) to determine the first peptide-bound crystal structure at 2.6 Å resolution. The structure reveals key interactions involved in substrate binding which we have identified to be conserved in other known zinc metalloproteases. In addition, the structure provides evidence for a potential exosite within the central cavity that may play a critical role in substrate positioning. Together, these results contribute to our understanding of the molecular function of NEP.

Keywords: NEP; crystallography; neprilysin; neutral endopeptidase; peptide-bound; protein structure; zinc metalloprotease.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence / genetics
  • Binding Sites / genetics
  • Crystallography, X-Ray
  • Humans
  • Metalloproteases / chemistry
  • Metalloproteases / genetics
  • Metalloproteases / ultrastructure*
  • Neprilysin / chemistry
  • Neprilysin / genetics
  • Neprilysin / ultrastructure*
  • Peptides / chemistry*
  • Protein Binding / genetics
  • Substrate Specificity
  • Zinc / chemistry

Substances

  • Peptides
  • Metalloproteases
  • Neprilysin
  • Zinc