At Least Two Genes Encode Many Variants of Irak3 in Rainbow Trout, but Neither the Full-Length Factor Nor Its Variants Interfere Directly With the TLR-Mediated Stimulation of Inflammation

Front Immunol. 2019 Sep 20:10:2246. doi: 10.3389/fimmu.2019.02246. eCollection 2019.

Abstract

The interleukin-1-receptor-associated kinase 3 (IRAK3) is known in mammals as a negative feedback regulator of NF-κB-mediated innate-immune mechanisms. Our RNA-seq experiments revealed a prototypic 1920-nt sequence encoding irak3 from rainbow trout (Oncorhynchus mykiss), as well as 20 variants that vary in length and nucleotide composition. Based on the DNA-sequence information from two closely related irak3 genes from rainbow trout and an irak3-sequence fragment from Atlantic salmon retrieved from public databases, we elucidated the underlying genetic causes for this striking irak3 diversity. Infecting rainbow trout with a lethal dose of Aeromonas salmonicida enhanced the expression of all variants in the liver, head kidney, and peripheral blood leucocytes. We analyzed the functional impact of the full-length factor and selected structural variants by overexpressing them in mammalian HEK-293 cells. The full-length factor enhanced the basal activity of NF-κB, but did not dampen the TLR2-signaling-induced levels of NF-κB activation. Increasing the basal NF-κB-activity through Irak3 apparently does not involve its C-terminal domain. However, more severely truncated factors had only a minor impact on the activity of NF-κB. The TLR2-mediated stimulation did not alter the spatial distribution of Irak3 inside the cells. In salmonid CHSE-214 cells, we observed that the Irak3-splice variant that prominently expresses the C-terminal domain significantly quenched the stimulation-dependent production of interleukin-1β and interleukin-8, but not the production of other immune regulators. We conclude that the different gene and splice variants of Irak3 from trout play distinct roles in the activation of immune-regulatory mechanisms.

Keywords: CHSE-214; GFP expression plasmid; IRAK-3; Toll-like receptor signaling; salmonid fishes.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Cell Line
  • Fish Proteins / genetics*
  • Gene Expression Regulation / genetics
  • Genetic Variation / genetics*
  • HEK293 Cells
  • Humans
  • Inflammation / genetics*
  • Interleukin-1 Receptor-Associated Kinases / genetics*
  • Interleukin-1beta / genetics
  • Interleukin-8 / genetics
  • NF-kappa B / genetics
  • Oncorhynchus mykiss / genetics*
  • Signal Transduction / genetics
  • Toll-Like Receptor 2 / genetics*

Substances

  • Fish Proteins
  • Interleukin-1beta
  • Interleukin-8
  • NF-kappa B
  • Toll-Like Receptor 2
  • Interleukin-1 Receptor-Associated Kinases