Base-catalyzed reversal of a psoralen-DNA cross-link

Biochemistry. 1988 Jul 12;27(14):5174-8. doi: 10.1021/bi00414a034.

Abstract

Base-catalyzed reversal of a psoralen-DNA cross-link has been observed under denaturing alkaline conditions at elevated temperatures. The cross-link was formed between 4'-(hydroxymethyl)-4,5',8-trimethylpsoralen and the two thymidine residues (T) on opposite strands of the double-stranded DNA formed from the self-complementary oligonucleotide 5'-GGGTACCC-3'. In contrast to the photoreversal of the cross-link, which yields mostly the furan-side monoadducted oligonucleotide [Cimino, G. D., Shi, Y., & Hearst, J. E. (1986) Biochemistry 25, 3013-3020], base-catalyzed reversal of the cross-link yields only pyrone-side monoadducted oligonucleotides as identified on the basis of their mobilities on a 20% polyacrylamide-7 M urea gel and their chemical and photochemical properties. A mechanism has been proposed to explain the base-catalyzed reversal reaction. This observation suggests a way to make pyrone-side monoadducted DNA. It also suggests that caution must be taken when psoralen-adducted DNA is treated under denaturing alkaline conditions.

Publication types

  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Chromatography, High Pressure Liquid
  • Cross-Linking Reagents / metabolism*
  • DNA / metabolism*
  • Electrophoresis, Polyacrylamide Gel
  • Furocoumarins / metabolism*
  • Oligonucleotides / analysis
  • Trioxsalen / analogs & derivatives
  • Trioxsalen / metabolism*

Substances

  • Cross-Linking Reagents
  • Furocoumarins
  • Oligonucleotides
  • hydroxymethyltrioxsalen
  • DNA
  • Trioxsalen