Intraresidual Correlated Motions in Peptide Chains

J Chem Inf Model. 2019 Nov 25;59(11):4524-4527. doi: 10.1021/acs.jcim.9b00842. Epub 2019 Nov 4.

Abstract

We investigate the interresidual and intraresidual correlations between dihedral displacements of adjacent residues within model polyalanine peptides by analyzing extensive molecular dynamics trajectories. Correlations are evaluated individually at different residue conformations covering the whole (ϕii)-space. From these, we draw maps that unveil an unprecedented strong intramolecular correlation displaying opposite (correlated/anticorrelated) behaviors at different conformations. Both interresidual and intraresidual correlations arise from the propensity of the peptide to minimize the overall atomic displacements.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Molecular Dynamics Simulation
  • Peptides / chemistry*
  • Protein Conformation
  • Quantum Theory
  • Thermodynamics

Substances

  • Peptides
  • polyalanine