A TCR β-Chain Motif Biases toward Recognition of Human CD1 Proteins

J Immunol. 2019 Dec 15;203(12):3395-3406. doi: 10.4049/jimmunol.1900872. Epub 2019 Nov 6.

Abstract

High-throughput TCR sequencing allows interrogation of the human TCR repertoire, potentially connecting TCR sequences to antigenic targets. Unlike the highly polymorphic MHC proteins, monomorphic Ag-presenting molecules such as MR1, CD1d, and CD1b present Ags to T cells with species-wide TCR motifs. CD1b tetramer studies and a survey of the 27 published CD1b-restricted TCRs demonstrated a TCR motif in humans defined by the TCR β-chain variable gene 4-1 (TRBV4-1) region. Unexpectedly, TRBV4-1 was involved in recognition of CD1b regardless of the chemical class of the carried lipid. Crystal structures of two CD1b-specific TRBV4-1+ TCRs show that germline-encoded residues in CDR1 and CDR3 regions of TRBV4-1-encoded sequences interact with each other and consolidate the surface of the TCR. Mutational studies identified a key positively charged residue in TRBV4-1 and a key negatively charged residue in CD1b that is shared with CD1c, which is also recognized by TRBV4-1 TCRs. These data show that one TCR V region can mediate a mechanism of recognition of two related monomorphic Ag-presenting molecules that does not rely on a defined lipid Ag.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Motifs*
  • Antigen Presentation
  • Antigens, CD1d / chemistry*
  • Antigens, CD1d / metabolism*
  • Binding Sites*
  • Conserved Sequence
  • Epitopes, T-Lymphocyte / chemistry
  • Epitopes, T-Lymphocyte / immunology
  • Epitopes, T-Lymphocyte / metabolism
  • Gene Rearrangement
  • High-Throughput Nucleotide Sequencing
  • Humans
  • Immunophenotyping
  • Lipids / chemistry
  • Models, Molecular
  • Mutation
  • Protein Binding
  • Protein Conformation
  • Protein Multimerization
  • Receptors, Antigen, T-Cell, alpha-beta / chemistry*
  • Receptors, Antigen, T-Cell, alpha-beta / genetics
  • Receptors, Antigen, T-Cell, alpha-beta / metabolism*
  • Structure-Activity Relationship
  • T-Lymphocytes / immunology
  • T-Lymphocytes / metabolism

Substances

  • Antigens, CD1d
  • CD1D protein, human
  • Epitopes, T-Lymphocyte
  • Lipids
  • Receptors, Antigen, T-Cell, alpha-beta