Reverse-transcription recombinase-aided amplification assay for H7 subtype avian influenza virus

Transbound Emerg Dis. 2020 Mar;67(2):877-883. doi: 10.1111/tbed.13411. Epub 2019 Dec 4.

Abstract

H7 subtype avian influenza virus infection is an emerging zoonosis in some Asian countries and an important avian disease worldwide. A rapid and simple test is needed to confirm infection in suspected cases during disease outbreaks. In this study, we developed a reverse-transcription recombinase-aided amplification assay for the detection of H7 subtype avian influenza virus. Assays were performed at a single temperature (39°C), and the results were obtained within 20 min. The assay showed no cross-detection with Newcastle disease virus or infectious bronchitis virus, which are the other main respiratory viruses affecting birds. The analytical sensitivity was 102 RNA copies per reaction at a 95% probability level according to probit regression analysis, with 100% specificity. Compared with published reverse-transcription quantitative real-time polymerase chain reaction assays, the κ value of the reverse-transcription recombinase-aided amplification assay in 342 avian clinical samples was 0.988 (p < .001). The sensitivity for avian clinical sample detection was 100% (95%CI, 90.40%-100%), and the specificity was 99.96% (95%CI, 97.83%-99.98%). These results indicated that our reverse-transcription recombinase-aided amplification assay may be a valuable tool for detecting avian influenza H7 subtype virus.

Keywords: H7 subtype; avian influenza; reverse-transcription recombinase-aided amplification assay.

Publication types

  • Evaluation Study

MeSH terms

  • Animals
  • Birds
  • Humans
  • Influenza A virus / classification*
  • Influenza A virus / genetics
  • Influenza in Birds / diagnosis*
  • Influenza in Birds / virology
  • Influenza, Human / virology*
  • Nucleic Acid Amplification Techniques / veterinary
  • Real-Time Polymerase Chain Reaction
  • Recombinases / metabolism*
  • Reverse Transcriptase Polymerase Chain Reaction / veterinary*
  • Reverse Transcription
  • Sensitivity and Specificity
  • Zoonoses

Substances

  • Recombinases

Associated data

  • GENBANK/MF455316.1