Bio-SCOPE: fast biexponential T mapping of the brain using signal-compensated low-rank plus sparse matrix decomposition

Magn Reson Med. 2020 Jun;83(6):2092-2106. doi: 10.1002/mrm.28067. Epub 2019 Nov 24.

Abstract

Purpose: To develop and evaluate a fast imaging method based on signal-compensated low-rank plus sparse matrix decomposition to accelerate data acquisition for biexponential brain T mapping (Bio-SCOPE).

Methods: Two novel strategies were proposed to improve reconstruction performance. A variable-rate undersampling scheme was used with a varied acceleration factor for each k-space along the spin-lock time direction, and a modified nonlinear thresholding scheme combined with a feature descriptor was used for Bio-SCOPE reconstruction. In vivo brain T mappings were acquired from 4 volunteers. The fully sampled k-space data acquired from 3 volunteers were retrospectively undersampled by net acceleration rates (R) of 4.6 and 6.1. Reference values were obtained from the fully sampled data. The agreement between the accelerated T measurements and reference values was assessed with Bland-Altman analyses. Prospectively undersampled data with R = 4.6 and R = 6.1 were acquired from 1 volunteer.

Results: T -weighted images were successfully reconstructed using Bio-SCOPE for R = 4.6 and 6.1 with signal-to-noise ratio variations <1 dB and normalized root mean square errors <4%. Accelerated and reference T measurements were in good agreement for R = 4.6 (Ts : 18.6651 ± 1.7786 ms; Tl : 88.9603 ± 1.7331 ms) and R = 6.1 (Ts : 17.8403 ± 3.3302 ms; Tl : 88.0275 ± 4.9606 ms) in the Bland-Altman analyses. T parameter maps from prospectively undersampled data also show reasonable image quality using the Bio-SCOPE method.

Conclusion: Bio-SCOPE achieves a high net acceleration rate for biexponential T mapping and improves reconstruction quality by using a variable-rate undersampling data acquisition scheme and a modified soft-thresholding algorithm in image reconstruction.

Keywords: biexponential brain T1ρ mapping; compressed sensing; low rank; signal compensation.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Algorithms
  • Brain* / diagnostic imaging
  • Humans
  • Magnetic Resonance Imaging*
  • Phantoms, Imaging
  • Retrospective Studies