Polymorphism analyses and protein modelling inform on functional specialization of Piwi clade genes in the arboviral vector Aedes albopictus

PLoS Negl Trop Dis. 2019 Dec 2;13(12):e0007919. doi: 10.1371/journal.pntd.0007919. eCollection 2019 Dec.

Abstract

Current knowledge of the piRNA pathway is based mainly on studies on Drosophila melanogaster where three proteins of the Piwi subclade of the Argonaute family interact with PIWI-interacting RNAs to silence transposable elements in gonadal tissues. In mosquito species that transmit epidemic arboviruses such as dengue and chikungunya viruses, Piwi clade genes underwent expansion, are also expressed in the soma and cross-talk with proteins of recognized antiviral function cannot be excluded for some Piwi proteins. These observations underscore the importance of expanding our knowledge of the piRNA pathway beyond the model organism D. melanogaster. Here we focus on the emerging arboviral vector Aedes albopictus and we couple traditional approaches of expression and adaptive evolution analyses with most current computational predictions of protein structure to study evolutionary divergence among Piwi clade proteins. Superposition of protein homology models indicate possible high structure similarity among all Piwi proteins, with high levels of amino acid conservation in the inner regions devoted to RNA binding. On the contrary, solvent-exposed surfaces showed low conservation, with several sites under positive selection. Analysis of the expression profiles of Piwi transcripts during mosquito development and following infection with dengue serotype 1 or chikungunya viruses showed a concerted elicitation of all Piwi transcripts during viral dissemination of dengue viruses while maintenance of infection relied on expression of primarily Piwi5. Opposite, establishment of persistent infection by chikungunya virus is accompanied by increased expression of all Piwi genes, particularly Piwi4 and, again, Piwi5. Overall these results are consistent with functional specialization and a general antiviral role for Piwi5. Experimental evidences of sites under positive selection in Piwi1/3, Piwi4 and Piwi6, that have complex expression profiles, provide useful knowledge to design tailored functional experiments.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Aedes / classification*
  • Aedes / genetics*
  • Animals
  • Argonaute Proteins / biosynthesis
  • Argonaute Proteins / genetics*
  • Conserved Sequence
  • Evolution, Molecular
  • Female
  • Gene Expression Profiling
  • Genetic Variation*
  • Genotype
  • Insect Proteins / genetics*
  • Male
  • Mosquito Vectors / classification*
  • Mosquito Vectors / genetics*

Substances

  • Argonaute Proteins
  • Insect Proteins

Grant support

This research was funded by a European Research Council Consolidator Grant (ERCCoG) under the European Union’s Horizon 2020 Programme (Grant Number ERCCoG 682394) to M.B.; by the Italian Ministry of Education, University and Research FARE-MIUR project R1623HZAH5 to M.B.; by the Italian Ministry of Education, University and Research (MIUR): Dipartimenti Eccellenza Program (2018–2022) Dept. of Biology and Biotechnology “L. Spallanzani”, University of Pavia. The funders had no role in study design, data collection and interpretation, or the decision to submit the work for publication.