Combining genomics and epidemiology to analyse bi-directional transmission of Mycobacterium bovis in a multi-host system

Elife. 2019 Dec 17:8:e45833. doi: 10.7554/eLife.45833.


Quantifying pathogen transmission in multi-host systems is difficult, as exemplified in bovine tuberculosis (bTB) systems, but is crucial for control. The agent of bTB, Mycobacterium bovis, persists in cattle populations worldwide, often where potential wildlife reservoirs exist. However, the relative contribution of different host species to bTB persistence is generally unknown. In Britain, the role of badgers in infection persistence in cattle is highly contentious, despite decades of research and control efforts. We applied Bayesian phylogenetic and machine-learning approaches to bacterial genome data to quantify the roles of badgers and cattle in M. bovis infection dynamics in the presence of data biases. Our results suggest that transmission occurs more frequently from badgers to cattle than vice versa (10.4x in the most likely model) and that within-species transmission occurs at higher rates than between-species transmission for both. If representative, our results suggest that control operations should target both cattle and badgers.

Keywords: Mycobacterium bovis; badger; bovine tuberculosis; cattle; epidemiology; global health; infectious disease; microbiology; whole genome sequencing.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Animals, Wild / microbiology
  • Bayes Theorem
  • Cattle
  • Disease Reservoirs / microbiology
  • Genome, Bacterial / genetics*
  • Genomics / methods*
  • Host-Pathogen Interactions
  • Mustelidae / microbiology
  • Mycobacterium bovis / classification
  • Mycobacterium bovis / genetics*
  • Mycobacterium bovis / physiology
  • Phylogeny
  • Tuberculosis, Bovine / epidemiology
  • Tuberculosis, Bovine / microbiology
  • Tuberculosis, Bovine / transmission*