MicroRNAomic Transcriptomic Analysis Reveal Deregulation of Clustered Cellular Functions in Human Mesenchymal Stem Cells During in Vitro Passaging

Stem Cell Rev Rep. 2020 Feb;16(1):222-238. doi: 10.1007/s12015-019-09924-0.

Abstract

Clinical trials using human mesenchymal stem/stromal cells (hMSCs) for cell replacement therapy showed varied outcomes, where cells' efficacy has been perceived as the limiting factor. In particular, the quality and number of the expanded cells in vitro. In this study, we aimed to determine molecular signatures of hMSCs derived from the pulp of extracted deciduous teeth (SHED) and Wharton's jelly (WJSCs) that associated with cellular ageing during in vitro passaging. We observed distinct phenotypic changes resembling proliferation reduction, cell enlargement, an increase cell population in G2/M phase, and differentially expressed of tumor suppressor p53 in passage (P) 6 as compared to P3, which indicating in vitro cell senescence. The subsequent molecular analysis showed a set of diverse differentially expressed miRNAs and mRNAs involved in maintaining cell proliferation and stemness properties. Considering the signaling pathway related to G2/M DNA damage regulation is widely recognized as part of anti-proliferation mechanism controlled by p53, we explored possible miRNA-mRNA interaction in this regulatory pathway based on genomic coordinates retrieved from miRanda. Our work reveals the potential reason for SHED underwent proliferation arrest due to the direct impinge on the expression of CKS1 by miRNAs specifically miR-22 and miR-485-5p which lead to down regulation of CDK1 and Cyclin B. It is intended that our study will contribute to the understanding of these miRNA/mRNA driving the biological process and regulating different stages of cell cycle is beneficial in developing effective rejuvenation strategies in order to obtain quality stem cells for transplantation.

Keywords: Cell proliferation; Cell senescence; Cellular ageing; Human Mesenchymal stem / stromal cells; miRNA-mRNA integration.

MeSH terms

  • CDC2-CDC28 Kinases / genetics
  • Cell Differentiation / genetics
  • Cell Proliferation / genetics
  • Cellular Senescence / genetics*
  • Cyclin B / genetics
  • Gene Expression Regulation, Developmental / genetics
  • Humans
  • Mesenchymal Stem Cells / cytology
  • Mesenchymal Stem Cells / metabolism*
  • MicroRNAs / genetics*
  • Transcriptome / genetics*
  • Tumor Suppressor Protein p53 / genetics
  • Umbilical Cord / cytology
  • Umbilical Cord / metabolism

Substances

  • CKS1B protein, human
  • Cyclin B
  • MIRN22 microRNA, human
  • MIRN485 microRNA, human
  • MicroRNAs
  • TP53 protein, human
  • Tumor Suppressor Protein p53
  • CDC2-CDC28 Kinases