Unexpected NADPH Hydratase Activity in the Nitrile Reductase QueF from Escherichia coli

Chembiochem. 2020 May 15;21(10):1534-1543. doi: 10.1002/cbic.201900679. Epub 2020 Feb 20.

Abstract

The nitrile reductase QueF catalyzes NADPH-dependent reduction of the nitrile group of preQ0 (7-cyano-7-deazaguanine) into the primary amine of preQ1 (7-aminomethyl-7-deazaguanine), a biologically unique reaction important in bacterial nucleoside biosynthesis. Here we have discovered that the QueF from Escherichia coli-its D197A and E89L variants in particular (apparent kcat ≈10-2 min-1 )-also catalyze the slow hydration of the C5=C6 double bond of the dihydronicotinamide moiety of NADPH. The enzymatically C6-hydrated NADPH is a 3.5:1 mixture of R and S forms and rearranges spontaneously through anomeric epimerization (β→α) and cyclization at the tetrahydronicotinamide C6 and the ribosyl O2. NADH and 1-methyl- or 1-benzyl-1,4-dihydronicotinamide are not substrates of the enzymatic hydration. Mutagenesis results support a QueF hydratase mechanism, in which Cys190-the essential catalytic nucleophile for nitrile reduction-acts as the general acid for protonation at the dihydronicotinamide C5 of NADPH. Thus, the NADPH hydration in the presence of QueF bears mechanistic resemblance to the C=C double bond hydration in natural hydratases.

Keywords: C=C double bond hydration; NADPH; cofactors; hydration; nitrile reductases.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Catalysis
  • Cysteine / chemistry*
  • Cysteine / genetics
  • Cysteine / metabolism
  • Escherichia coli / enzymology*
  • Escherichia coli Proteins / chemistry
  • Escherichia coli Proteins / genetics
  • Escherichia coli Proteins / metabolism*
  • Hydro-Lyases / metabolism*
  • Mutagenesis, Site-Directed
  • Mutation
  • NADP / chemistry*
  • NADP / metabolism
  • Nitriles / chemistry*
  • Nitriles / metabolism
  • Oxidoreductases / chemistry
  • Oxidoreductases / genetics
  • Oxidoreductases / metabolism*

Substances

  • Escherichia coli Proteins
  • Nitriles
  • NADP
  • Oxidoreductases
  • QueF protein, E coli
  • Hydro-Lyases
  • Cysteine