Molecular characterization, computational analysis and expression profiling of Dmrt1 gene in Indian major carp, Labeo rohita (Hamilton 1822)

Anim Biotechnol. 2021 Aug;32(4):413-426. doi: 10.1080/10495398.2019.1707683. Epub 2019 Dec 27.

Abstract

Sexual dimorphism of fish morphology, physiology and behavior is diverse and complex in nature. Doublesex and mab-3 related transcription factor (Dmrt) is a large protein family whose function is sexual development and differentiation in vertebrates. Here, we report a full-length cDNA sequence of Labeo rohita (rohu) Dmrt1 of 907 bp length having 798 bp of open reading frame encoding 265 amino acids. The molecular weight of rohu DMRT1 protein was found to be 28.74 KDa and isoelectric point was 7.53. DMRT1 protein contains 23 positively and 24 negatively charged amino acids with a GRAVY score of -0.618. A characteristic DM domain was found in DMRT1 protein, which is a novel DNA-binding domain. Phylogenetic analysis showed maximum similarity with Cyprinus carpio when compared with DMRT1 of other vertebrates. Molecular docking study identified active sites to be targeted for drug designing. Rohu DMRT1 was observed to interact with other proteins such as FOXL2, CYP19a1a, AMH and SOX9a. Differential expression study revealed higher expression in testis tissue implying its role in male sex differentiation and testicular development. The information generated in the present work could facilitate further research to resolve the issues related to gonadal maturation and reproduction of commercially important aquaculture species.

Keywords: DM domain; DMRT1; Labeo rohita; Sex differentiation; gonadal maturation.

MeSH terms

  • Amino Acids
  • Animals
  • Carps* / genetics
  • Fish Proteins / genetics*
  • Male
  • Molecular Docking Simulation
  • Phylogeny
  • Testis
  • Transcription Factors / genetics*
  • Transcriptome

Substances

  • Amino Acids
  • DMRT1 protein
  • Fish Proteins
  • Transcription Factors