Alternative Splicing of the SLCO1B1 Gene: An Exploratory Analysis of Isoform Diversity in Pediatric Liver

Clin Transl Sci. 2020 May;13(3):509-519. doi: 10.1111/cts.12733. Epub 2020 Jan 9.


The hepatic influx transporter OATP1B1 (SLCO1B1) plays an important role in the disposition of endogenous substrates and drugs prescribed to children. Alternative splicing increases the diversity of protein products from > 90% of human genes and may be triggered by developmental signals. As concentrations of several endogenous OATP1B1 substrates change during growth and development, with this exploratory study we investigated age-dependent alternative splicing of SLCO1B1 mRNA in 97 postmortem livers (fetus-adolescents). Twenty-seven splice variants were detected; 10 were confirmed by additional bioinformatic analyses and verified by quantitative polymerase chain reaction, and selected for detailed analysis based on relative abundance, association with age, and overlap with an adjacent gene. Two splice variants code for reference OATP1B1 protein, and eight code for truncated proteins. The expression of eight isoforms was associated with age. We conclude that alternative splicing of SLCO1B1 occurs frequently in children; although the functional consequences remain unknown, the data raise the possibility of a regulatory role for alternative splicing in mediating developmental changes in drug disposition.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Aborted Fetus
  • Adolescent
  • Age Factors
  • Alternative Splicing*
  • Child
  • Child, Preschool
  • Gene Expression Regulation, Developmental*
  • Humans
  • Infant
  • Infant, Newborn
  • Liver / metabolism*
  • Liver-Specific Organic Anion Transporter 1 / genetics*
  • Liver-Specific Organic Anion Transporter 1 / metabolism
  • Netherlands
  • Organic Anion Transporters / genetics
  • Organic Anion Transporters / metabolism
  • Protein Isoforms / genetics
  • Protein Isoforms / metabolism
  • RNA-Seq
  • Solute Carrier Proteins / genetics
  • Solute Carrier Proteins / metabolism
  • Stillbirth


  • Liver-Specific Organic Anion Transporter 1
  • Organic Anion Transporters
  • Protein Isoforms
  • SLCO1B1 protein, human
  • SLCO1B7 protein, human
  • Solute Carrier Proteins