Peptide-Driven Shape Control of Low-Dimensional DNA Nanostructures

ACS Nano. 2020 Feb 25;14(2):2276-2284. doi: 10.1021/acsnano.9b09312. Epub 2020 Jan 24.

Abstract

We report the rational design and fabrication of unusual low-dimensional DNA nanostructures through programmable and sequence-specific peptide interactions. Dual-bioactive block copolymers composed of DNA and amino acid-based polymers (DNA-b-poly(amino acid)) were synthesized by coupling oligonucleotides to phenylalanine (Phe)-based polymers. Unlike prototypical DNA block copolymers, which typically form simple spherical micelles, DNA-b-poly(amino acid) assemble into various low-dimensional structures such as nanofibers, ribbons, and sheets through controllable amino acid interactions. Moreover, DNA-b-poly(amino acid) assemblies can undergo protease-induced fiber-to-sheet shape transformations, where the morphology change is dictated by the type of enzymes and amino acid sequences. The peptide-based self-assembly reported here provides a programmable approach to fabricate dynamic DNA assemblies with diverse and unusual low-dimensional structures.

Keywords: DNA; block copolymer; nanofiber; nanosheet; peptide; self-assembly.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acids / chemistry
  • Amino Acids / metabolism
  • Biocatalysis
  • DNA / chemistry*
  • DNA / metabolism
  • Gold / chemistry
  • Gold / metabolism
  • Hydrolysis
  • Metal Nanoparticles / chemistry
  • Molecular Structure
  • Nanostructures / chemistry*
  • Particle Size
  • Peptide Hydrolases / chemistry
  • Peptide Hydrolases / metabolism
  • Peptides / chemistry*
  • Peptides / metabolism
  • Polymers / chemistry
  • Polymers / metabolism
  • Surface Properties

Substances

  • Amino Acids
  • Peptides
  • Polymers
  • Gold
  • DNA
  • Peptide Hydrolases