Molecular architectonics of DNA for functional nanoarchitectures

Beilstein J Nanotechnol. 2020 Jan 9:11:124-140. doi: 10.3762/bjnano.11.11. eCollection 2020.

Abstract

DNA is the key biomolecule central to almost all processes in living organisms. The eccentric idea of utilizing DNA as a material building block in molecular and structural engineering led to the creation of numerous molecular-assembly systems and materials at the nanoscale. The molecular structure of DNA is believed to have evolved over billions of years, with structure and stability optimizations that allow life forms to sustain through the storage and transmission of genetic information with fidelity. The nanoscale structural characteristics of DNA (2 nm thickness and ca. 40-50 nm persistence length) have inspired the creation of numerous functional patterns and architectures through noncovalent conventional and unconventional base pairings as well as through mutual templating-interactions with small organic molecules and metal ions. The recent advancements in structural DNA nanotechnology allowed researchers to design new DNA-based functional materials with chemical and biological properties distinct from their parent components. The modulation of structural and functional properties of hybrid DNA ensembles of small functional molecules (SFMs) and short oligonucleotides by adapting the principles of molecular architectonics enabled the creation of novel DNA nanoarchitectures with potential applications, which has been termed as templated DNA nanotechnology or functional DNA nanoarchitectonics. This review highlights the molecular architectonics-guided design principles and applications of the derived DNA nanoarchitectures. The advantages and ability of functional DNA nanoarchitectonics to overcome the trivial drawbacks of classical DNA nanotechnology to fulfill realistic and practical applications are highlighted, and an outlook on future developments is presented.

Keywords: DNA nanotechnology; functional DNA nanoarchitectonics; functional small molecules; molecular architectonics; nucleic acids; templated coassembly.

Publication types

  • Review

Grants and funding

We thank JNCASR, the DST-Nanomission (grant: DST/SMS/4428 and SR/NM/TP-25/2016), the DST-Swarnajayanti Fellowship scheme, the Government of India, the Sheikh Saqr Laboratory (SSL), and ICMS-JNCASR for financial support.