Molecular mechanism of sulfur chemolithotrophy in the betaproteobacterium Pusillimonas ginsengisoli SBSA

Microbiology (Reading). 2020 Apr;166(4):386-397. doi: 10.1099/mic.0.000890. Epub 2020 Jan 30.

Abstract

Chemolithotrophic sulfur oxidation represents a significant part of the biogeochemical cycling of this element. Due to its long evolutionary history, this ancient metabolism is well known for its extensive mechanistic and phylogenetic diversification across a diverse taxonomic spectrum. Here we carried out whole-genome sequencing and analysis of a new betaproteobacterial isolate, Pusillimonas ginsengisoli SBSA, which is found to oxidize thiosulfate via the formation of tetrathionate as an intermediate. The 4.7 Mb SBSA genome was found to encompass a soxCDYZAXOB operon, plus single thiosulfate dehydrogenase (tsdA) and sulfite : acceptor oxidoreductase (sorAB) genes. Recombination-based knockout of tsdA revealed that the entire thiosulfate is first converted to tetrathionate by the activity of thiosulfate dehydrogenase (TsdA) and the Sox pathway is not functional in this bacterium despite the presence of all necessary sox genes. The ∆soxYZ and ∆soxXA knockout mutants exhibited a wild-type-like phenotype for thiosulfate/tetrathionate oxidation, whereas ∆soxB,soxCD and soxO::KanR mutants only oxidized thiosulfate up to tetrathionate intermediate and had complete impairment in tetrathionate oxidation. The substrate-dependent O2 consumption rate of whole cells and the sulfur-oxidizing enzyme activities of cell-free extracts, measured in the presence/absence of thiol inhibitors/glutathione, indicated that glutathione plays a key role in SBSA tetrathionate oxidation. The present findings collectively indicate that the potential glutathione : tetrathionate coupling in P. ginsengisoli involves a novel enzymatic component, which is different from the dual-functional thiol dehydrotransferase (ThdT), while subsequent oxidation of the sulfur intermediates produced (e.g. glutathione : sulfodisulfane molecules) may proceed via the iterative action of soxBCD .

Keywords: Betaproteobacteria; glutathione; sulfur chemolithotrophy; tetrathionate oxidation.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Alcaligenaceae / genetics
  • Alcaligenaceae / metabolism*
  • Bacterial Proteins / genetics
  • Chemoautotrophic Growth / genetics*
  • Genome, Bacterial / genetics
  • Glutathione / metabolism
  • Mutation
  • Oxidation-Reduction
  • Oxidoreductases / genetics
  • Oxygen / metabolism
  • Sulfhydryl Compounds / metabolism
  • Sulfites / metabolism
  • Sulfur / metabolism*
  • Tetrathionic Acid / metabolism
  • Thiosulfates / metabolism

Substances

  • Bacterial Proteins
  • Sulfhydryl Compounds
  • Sulfites
  • Thiosulfates
  • Sulfur
  • Tetrathionic Acid
  • Oxidoreductases
  • Glutathione
  • Oxygen

Supplementary concepts

  • Pusillimonas ginsengisoli