Prognostic DNA methylation markers for hormone receptor breast cancer: a systematic review

Breast Cancer Res. 2020 Jan 31;22(1):13. doi: 10.1186/s13058-020-1250-9.

Abstract

Background: In patients with hormone receptor-positive breast cancer, differentiating between patients with a low and a high risk of recurrence is an ongoing challenge. In current practice, prognostic clinical parameters are used for risk prediction. DNA methylation markers have been proven to be of additional prognostic value in several cancer types. Numerous prognostic DNA methylation markers for breast cancer have been published in the literature. However, to date, none of these markers are used in clinical practice.

Methods: We conducted a systematic review of PubMed and EMBASE to assess the number and level of evidence of published DNA methylation markers for hormone receptor-positive breast cancer. To obtain an overview of the reporting quality of the included studies, all were scored according to the REMARK criteria that were established as reporting guidelines for prognostic biomarker studies.

Results: A total of 74 studies were identified reporting on 87 different DNA methylation markers. Assessment of the REMARK criteria showed variation in reporting quality of the studies. Eighteen single markers and one marker panel were studied in multiple independent populations. Hypermethylation of the markers RASSF1, BRCA, PITX2, CDH1, RARB, PCDH10 and PGR, and the marker panel GSTP1, RASSF1 and RARB showed a statistically significant correlation with poor disease outcome that was confirmed in at least one other, independent study.

Conclusion: This systematic review provides an overview on published prognostic DNA methylation markers for hormone receptor-positive breast cancer and identifies eight markers that have been independently validated. Analysis of the reporting quality of included studies suggests that future research on this topic would benefit from standardised reporting guidelines.

Keywords: Biomarkers; Breast cancer; DNA methylation; Hormone receptor positive; Luminal breast cancer; Oestrogen receptor positive; Prognosis; Promoter CpG island methylation; Survival.

Publication types

  • Research Support, Non-U.S. Gov't
  • Systematic Review

MeSH terms

  • Antigens, CD / genetics
  • BRCA1 Protein / genetics
  • Biomarkers, Tumor / genetics*
  • Breast Neoplasms / genetics*
  • Breast Neoplasms / metabolism
  • Breast Neoplasms / pathology*
  • Cadherins / genetics
  • DNA Methylation*
  • Estrogen Receptor alpha / metabolism*
  • Female
  • Glutathione S-Transferase pi / genetics
  • Homeobox Protein PITX2
  • Homeodomain Proteins / genetics
  • Humans
  • Intracellular Signaling Peptides and Proteins / genetics
  • Neoplasm Recurrence, Local / genetics
  • Neoplasm Recurrence, Local / pathology
  • Nuclear Proteins / genetics
  • Prognosis
  • Protocadherins
  • Receptors, Progesterone / metabolism*
  • Receptors, Retinoic Acid / genetics
  • Transcription Factors / genetics
  • Tumor Suppressor Proteins / genetics

Substances

  • Antigens, CD
  • BRCA1 Protein
  • BRCA1 protein, human
  • Biomarkers, Tumor
  • CDH1 protein, human
  • Cadherins
  • Estrogen Receptor alpha
  • Homeodomain Proteins
  • Intracellular Signaling Peptides and Proteins
  • MRFAP1 protein, human
  • Nuclear Proteins
  • PCDH1 protein, human
  • Protocadherins
  • RASSF1 protein, human
  • Receptors, Progesterone
  • Receptors, Retinoic Acid
  • Transcription Factors
  • Tumor Suppressor Proteins
  • retinoic acid receptor beta
  • GSTP1 protein, human
  • Glutathione S-Transferase pi