Abrogation of prenucleation, transient oligomerization of the Huntingtin exon 1 protein by human profilin I

Proc Natl Acad Sci U S A. 2020 Mar 17;117(11):5844-5852. doi: 10.1073/pnas.1922264117. Epub 2020 Mar 3.

Abstract

Human profilin I reduces aggregation and concomitant toxicity of the polyglutamine-containing N-terminal region of the huntingtin protein encoded by exon 1 (httex1) and responsible for Huntington's disease. Here, we investigate the interaction of profilin with httex1 using NMR techniques designed to quantitatively analyze the kinetics and equilibria of chemical exchange at atomic resolution, including relaxation dispersion, exchange-induced shifts, and lifetime line broadening. We first show that the presence of two polyproline tracts in httex1, absent from a shorter huntingtin variant studied previously, modulates the kinetics of the transient branched oligomerization pathway that precedes nucleation, resulting in an increase in the populations of the on-pathway helical coiled-coil dimeric and tetrameric species (τex ≤ 50 to 70 μs), while leaving the population of the off-pathway (nonproductive) dimeric species largely unaffected (τex ∼750 μs). Next, we show that the affinity of a single molecule of profilin to the polyproline tracts is in the micromolar range (K diss ∼ 17 and ∼ 31 μM), but binding of a second molecule of profilin is negatively cooperative, with the affinity reduced ∼11-fold. The lifetime of a 1:1 complex of httex1 with profilin, determined using a shorter huntingtin variant containing only a single polyproline tract, is shown to be on the submillisecond timescale (τ ex ∼ 600 μs and K diss ∼ 50 μM). Finally, we demonstrate that, in stable profilin-httex1 complexes, the productive oligomerization pathway, leading to the formation of helical coiled-coil httex1 tetramers, is completely abolished, and only the pathway resulting in "nonproductive" dimers remains active, thereby providing a mechanistic basis for how profilin reduces aggregation and toxicity of httex1.

Keywords: binding kinetics; negative cooperativity; oligomerization; relaxation-based NMR; short-lived excited states.

Publication types

  • Research Support, N.I.H., Intramural

MeSH terms

  • Binding Sites
  • Exons*
  • Humans
  • Huntingtin Protein / chemistry*
  • Huntingtin Protein / genetics
  • Huntingtin Protein / metabolism*
  • Huntington Disease / genetics
  • Huntington Disease / metabolism*
  • Kinetics
  • Magnetic Resonance Spectroscopy
  • Models, Molecular
  • Peptides
  • Profilins / chemistry*
  • Profilins / metabolism*
  • Protein Conformation
  • Protein Domains

Substances

  • HTT protein, human
  • Huntingtin Protein
  • PFN1 protein, human
  • Peptides
  • Profilins
  • polyproline

Associated data

  • figshare/10.6084/m9.figshare.11887860