Mutational and clinical spectrum in a cohort of Chinese patients with hereditary nemaline myopathy

Clin Genet. 2020 Jun;97(6):878-889. doi: 10.1111/cge.13745. Epub 2020 Apr 6.

Abstract

Hereditary nemaline myopathy (NM) is one of the most common congenital myopathies with the histopathological findings of nemaline bodies. We used targeted next-generation sequencing to identify causative mutations in 48 NM patients with confirmed myopathological diagnosis, analyze the mutational spectrum and phenotypic features. Furthermore, reverse transcription polymerase chain reaction (RT-PCR) was used to confirm the pathogenic effect of one nebulin (NEB) splicing variant. The results showed that variants were found in five NM-associated genes, including NEB, actin alpha 1 (ACTA1), troponin T1, Kelch repeat and BTB domain-containing 13, and cofilin-2, in 34 (73.9%), 7 (15.2%), 3 (6.5%), 1 (2.2%), and 1 (2.2%) patients, respectively, in a total of 46/48 (95.8%) NM patients. Of the total 64 variants identified, 51 were novel variants including 26 pathogenic, 1 probably pathogenic, and 24 variant of uncertain significance (VUS). Notably, one NEB splicing mutation, c.21417+3A>G causing exon 144 splicing (NM_001164508.1), as confirmed by RT-PCR, was found in 52.9% (18 patients) of NEB variant-carrying patients. Typical congenital NM, the most common clinical subtype (60.4%), was associated with five NM genes. We concluded that hereditary NM showed a highly variable genetic spectrum. NEB was the most frequent causative gene in this Chinese cohort, followed by ACTA1. We found a hotspot splicing mutation in NEB among Chinese cohort.

Keywords: Chinese; genotype; hereditary nemaline myopathy; phenotype.

MeSH terms

  • Actins / genetics*
  • Adolescent
  • Adult
  • Child
  • Child, Preschool
  • DNA Mutational Analysis
  • Exons / genetics
  • Female
  • Genetic Predisposition to Disease
  • High-Throughput Nucleotide Sequencing
  • Humans
  • Male
  • Middle Aged
  • Muscle Proteins / genetics*
  • Muscular Diseases / genetics*
  • Muscular Diseases / pathology
  • Mutation / genetics
  • Myopathies, Nemaline / genetics*
  • Myopathies, Nemaline / pathology
  • Phenotype
  • Protein Isoforms / genetics
  • RNA Splicing
  • Troponin T / genetics
  • Young Adult

Substances

  • ACTA1 protein, human
  • Actins
  • Muscle Proteins
  • Protein Isoforms
  • Troponin T
  • nebulin