Proteomic identification and expression of oral apparatus constituents in cell regeneration of giant ciliate Stentor coeruleus (strain WHEL)

Gene. 2020 Jun 15:743:144624. doi: 10.1016/j.gene.2020.144624. Epub 2020 Mar 26.

Abstract

The giant ciliate Stentor coeruleus (S. coeruleus) is a suitable model organism for studying morphogenesis and regeneration at the single-cell level. It contains a prominent structure on the anterior end of the cell, known as the oral apparatus (OA). OA can be induced to shed by urea treatment and then new OA regenerates via a series of defined morphological events and the cell resumes normal feeding activity. We identified OA constituents in S. coeruleus by mass spectrometry. A total of 882 OA-associated proteins were identified; the homologs of 181 of these are known OA constituents in other organisms. The expression pattern of OA-associated genes during regeneration was investigated using single-cell transcriptome sequencing. The expression of most OA-associated genes was high during regeneration, indicating their stable expression after OA shedding. We also identified OA-associated differentially expressed genes that may be involved in regulating OA reconstruction. In summary, this study gives preliminary insight into the molecular basis of OA in S. coeruleus.

Keywords: Gene Expression; Oral Apparatus Associated Genes; Proteome; Protozoan; Single-cell RNA-sequencing.

MeSH terms

  • Ciliophora / physiology*
  • Genes, Protozoan / genetics*
  • Mass Spectrometry
  • Proteomics
  • Protozoan Proteins / genetics
  • Protozoan Proteins / metabolism*
  • Regeneration*
  • Sequence Analysis, RNA
  • Single-Cell Analysis

Substances

  • Protozoan Proteins