Insights into structures of imidazo oxazines as potent polyketide synthase XIII inhibitors using molecular modeling techniques

J Recept Signal Transduct Res. 2020 Aug;40(4):313-323. doi: 10.1080/10799893.2020.1742740. Epub 2020 Mar 30.

Abstract

Tuberculosis, a major global health concern, and its drug development toward the disease are too devastating to meet the clinical demands. The present work emphasizes a detailed QSAR study using QSARINS which developed descriptors favoring an excellent model equation. The best model equation generated has four variables namely AlogP, ATSc4, mindssC, and MDEC23 with statistical values R2 = 0.7406, LOF = 0.1858, CCCtr = 0.8510, Q2LOO = 0.6569, Q2LMO = 0.6286, CCCcv = 0.8037, R2ext = 0.8600, and CCCext = 0.9252. The developed QSAR model justifies that the key structural fragments highly correlate with activity. Docking the designed compounds with PKS XIII, a novel target catalyzes the formation of mycolic acids and its results distinctly improve expected antitubercular activity showing all probable interactions. Compounds were further screened for ADME analysis and toxicity.

Keywords: ADMET; PKS13; QSARINS; nitro imidazo oxazines; toxicity.

MeSH terms

  • Antitubercular Agents / chemistry
  • Bacterial Proteins / ultrastructure*
  • Drug Design
  • Humans
  • Models, Molecular
  • Molecular Docking Simulation
  • Mycobacterium tuberculosis / drug effects
  • Mycobacterium tuberculosis / pathogenicity
  • Oxazines / chemistry*
  • Polyketide Synthases / ultrastructure*
  • Quantitative Structure-Activity Relationship
  • Tuberculosis / drug therapy*
  • Tuberculosis / enzymology*
  • Tuberculosis / microbiology
  • Tuberculosis / pathology

Substances

  • Antitubercular Agents
  • Bacterial Proteins
  • Oxazines
  • polyketide synthase Pks13, Mycobacterium tuberculosis
  • Polyketide Synthases