Dynamics of granular media is the key to understanding behavior of many natural systems. In this work we concentrate on studying regularities of deformation of a gouge-filled fault. Confined granular layer - model fault - subjected to an external stress may display sudden slip owing to rearrangement of the granular layer. In nature fast slip along a fault results in an earthquake. To understand fault behavior better, we have conducted a comprehensive analysis of acoustic emission (AE) data that accompany stick-slip in granular media. Here we reveal and trace the emergence of two populations of AE. The first one is characterized by a waveform with a harsh onset, while the second one exhibits a gradual amplitude rise and a tremor-like waveform. During a regular stick-slip the statistical properties of the first population remains intact. The second one is very sensitive to alterations of stress conditions, and its scaling parameters correlate with the change of mechanical characteristics of the fault. Probably, AE populations were identified corresponding to two gouge-filled fault subsystems - a load-bearing granular network and an ensemble of relatively unloaded grains in the granular layer. The detected regularities point to a compound self-organization processes in fault zones and suggest that the final stage of earthquake preparation can be revealed in analyzing the scaling characteristics of seismic-acoustic data.