Ultrastructural Evidence for Direct Renal Infection with SARS-CoV-2

J Am Soc Nephrol. 2020 Aug;31(8):1683-1687. doi: 10.1681/ASN.2020040432. Epub 2020 May 5.

Abstract

Background: A significant fraction of patients with coronavirus disease 2019 (COVID-19) display abnormalities in renal function. Retrospective studies of patients hospitalized with COVID-19 in Wuhan, China, report an incidence of 3%-7% progressing to ARF, a marker of poor prognosis. The cause of the renal failure in COVID-19 is unknown, but one hypothesized mechanism is direct renal infection by the causative virus, SARS-CoV-2.

Methods: We performed an autopsy on a single patient who died of COVID-19 after open repair of an aortic dissection, complicated by hypoxic respiratory failure and oliguric renal failure. We used light and electron microscopy to examine renal tissue for evidence of SARS-CoV-2 within renal cells.

Results: Light microscopy of proximal tubules showed geographic isometric vacuolization, corresponding to a focus of tubules with abundant intracellular viral arrays. Individual viruses averaged 76 µm in diameter and had an envelope studded with crown-like, electron-dense spikes. Vacuoles contained double-membrane vesicles suggestive of partially assembled virus.

Conclusions: The presence of viral particles in the renal tubular epithelium that were morphologically identical to SARS-CoV-2, and with viral arrays and other features of virus assembly, provide evidence of a productive direct infection of the kidney by SARS-CoV-2. This finding offers confirmatory evidence that direct renal infection occurs in the setting of AKI in COVID-19. However, the frequency and clinical significance of direct infection in COVID-19 is unclear. Tubular isometric vacuolization observed with light microscopy, which correlates with double-membrane vesicles containing vacuoles observed with electronic microscopy, may be a useful histologic marker for active SARS-CoV-2 infection in kidney biopsy or autopsy specimens.

Keywords: COVID-19; SARS-CoV-2; acute kidney failure; autopsy; electron microscopy; renal pathology.

Publication types

  • Case Reports

MeSH terms

  • Acute Kidney Injury / complications*
  • Acute Kidney Injury / mortality
  • Aortic Dissection / surgery
  • Autopsy
  • Betacoronavirus
  • COVID-19
  • Coronavirus Infections / complications*
  • Coronavirus Infections / mortality
  • Epithelial Cells / pathology
  • Humans
  • Kidney Tubules / pathology
  • Kidney Tubules / ultrastructure
  • Kidney Tubules / virology*
  • Male
  • Middle Aged
  • Nephritis / physiopathology
  • Pandemics
  • Pneumonia, Viral / complications*
  • Pneumonia, Viral / mortality
  • Prognosis
  • Respiratory Insufficiency
  • Retrospective Studies
  • SARS-CoV-2