Design principles of a minimal auxin response system

Nat Plants. 2020 May;6(5):473-482. doi: 10.1038/s41477-020-0662-y. Epub 2020 May 15.

Abstract

Auxin controls numerous growth processes in land plants through a gene expression system that modulates ARF transcription factor activity1-3. Gene duplications in families encoding auxin response components have generated tremendous complexity in most land plants, and neofunctionalization enabled various unique response outputs during development1,3,4. However, it is unclear what fundamental biochemical principles underlie this complex response system. By studying the minimal system in Marchantia polymorpha, we derive an intuitive and simple model where a single auxin-dependent A-ARF activates gene expression. It is antagonized by an auxin-independent B-ARF that represses common target genes. The expression patterns of both ARF proteins define developmental zones where auxin response is permitted, quantitatively tuned or prevented. This fundamental design probably represents the ancestral system and formed the basis for inflated, complex systems.

MeSH terms

  • Gene Expression Regulation, Plant / genetics
  • Gene Expression Regulation, Plant / physiology
  • Indoleacetic Acids / metabolism*
  • Marchantia / genetics
  • Marchantia / metabolism
  • Marchantia / physiology
  • Models, Biological
  • Plant Development / genetics
  • Plant Development / physiology
  • Plant Growth Regulators / metabolism
  • Plant Growth Regulators / physiology*
  • Plant Proteins / genetics
  • Plant Proteins / physiology
  • Polymerase Chain Reaction
  • Sequence Alignment
  • Transcription Factors / genetics
  • Transcription Factors / physiology

Substances

  • Indoleacetic Acids
  • Plant Growth Regulators
  • Plant Proteins
  • Transcription Factors