Trajectory mapping of human embryonic stem cell cardiogenesis reveals lineage branch points and an ISL1 progenitor-derived cardiac fibroblast lineage

Stem Cells. 2020 Oct 1;38(10):1267-1278. doi: 10.1002/stem.3236. Epub 2020 Jun 19.

Abstract

A family of multipotent heart progenitors plays a central role in the generation of diverse myogenic and nonmyogenic lineages in the heart. Cardiac progenitors in particular play a significant role in lineages involved in disease, and have also emerged to be a strong therapeutic candidate. Based on this premise, we aimed to deeply characterize the progenitor stage of cardiac differentiation at a single-cell resolution. Integrated comparison with an embryonic 5-week human heart transcriptomic dataset validated lineage identities with their late stage in vitro counterparts, highlighting the relevance of an in vitro differentiation for progenitors that are developmentally too early to be accessed in vivo. We utilized trajectory mapping to elucidate progenitor lineage branching points, which are supported by RNA velocity. Nonmyogenic populations, including cardiac fibroblast-like cells and endoderm, were found, and we identified TGFBI as a candidate marker for human cardiac fibroblasts in vivo and in vitro. Both myogenic and nonmyogenic populations express ISL1, and its loss redirected myogenic progenitors into a neural-like fate. Our study provides important insights into processes during early heart development.

Keywords: cardiac; differentiation; embryonic stem cells; gene expression; progenitor cells.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Cell Differentiation
  • Cell Lineage* / genetics
  • Cell Proliferation
  • Fetal Heart / physiology
  • Fibroblasts / cytology*
  • Fibroblasts / metabolism
  • Human Embryonic Stem Cells / cytology*
  • Humans
  • LIM-Homeodomain Proteins / metabolism
  • Muscle Development
  • Myocardium / cytology*
  • Myocytes, Cardiac / cytology
  • Organogenesis* / genetics
  • RNA Precursors / genetics
  • RNA Precursors / metabolism
  • Sequence Analysis, RNA
  • Single-Cell Analysis
  • Time Factors
  • Transcription Factors / metabolism
  • Transcription, Genetic

Substances

  • LIM-Homeodomain Proteins
  • RNA Precursors
  • Transcription Factors
  • insulin gene enhancer binding protein Isl-1